Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1094 ATGGTGGATAGGATGGTGAAGAAGGAGGTTGAACAACATGATGAACAAACTGTGACTCTGGGTTTCTATGGAGACGAGCAAGCTCAACGGAGGTTTTCTATAAACATGATGGATAAACAAAACAAGGCCACGGATAACAAAAACAAGGTCTTAAACTCTGATATAAAGCCTGTCACAAATGGCGAGGCACAAAAATTTGCAAGCTCTATGAAGGCTACAACAGCAGAAGCAACATCCTCTCGTGGTGAGGCTAAGTCATCTGCTGTAATTCGAGCAGAAGAGATCCGATCGAGTTTGCAAGGCGAATACCCGAGTTTTGTGAAGTCATTAGTGAGATCACATGTTGCTAGTTGTTTCTGGATGGGTCTGCCTGTGGCATTCTGTAAGAAGCACTTGGCAGATAAGGATACAACGATGACTTTGGAAGATGAATATGGCAAAGAATACAAGATGAAGTACATCGCATGCAAAACGGGATTGAGCGCAGGTTGGAGACAGTTTTCTGCTGTGCATAAGTTGCAGGAGGGTGACGTCTTGGTCTTCCAGTTAGTTGAACCTGCCAAGTTTAAGATTTATATAGTAAGAGCAGATAATTTAAGGGAAGTAGATGGGGCCCTTTCGCTTATGAATCTAGACAGTTATGCAAGACAAAAGCAGAGAGGCAAGCCTTGTTTTGTTTCTCCATGCTTTGCCTTCTTACAT 702 0.4288 MVDRMVKKEVEQHDEQTVTLGFYGDEQAQRRFSINMMDKQNKATDNKNKVLNSDIKPVTNGEAQKFASSMKATTAEATSSRGEAKSSAVIRAEEIRSSLQGEYPSFVKSLVRSHVASCFWMGLPVAFCKKHLADKDTTMTLEDEYGKEYKMKYIACKTGLSAGWRQFSAVHKLQEGDVLVFQLVEPAKFKIYIVRADNLREVDGALSLMNLDSYARQKQRGKPCFVSPCFAFLH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1094 234 MobiDBLite consensus disorder prediction 66 87 - -
Amo01g1094 234 SUPERFAMILY DNA-binding pseudobarrel domain 99 197 IPR015300 -
Amo01g1094 234 Pfam B3 DNA binding domain 106 195 IPR003340 GO:0003677
Amo01g1094 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 27 213 - -
Amo01g1094 234 CDD B3_DNA 104 195 IPR003340 GO:0003677
Amo01g1094 234 ProSiteProfiles B3 DNA-binding domain profile. 106 197 IPR003340 GO:0003677
Amo01g1094 234 SMART B3_2 106 197 IPR003340 GO:0003677
Amo01g1094 234 MobiDBLite consensus disorder prediction 66 85 - -
Amo01g1094 234 Gene3D - 82 199 IPR015300 -
Amo01g1094 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 213 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1094 Amo-Chr1 14627655 14629802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1094 83 201 B3 DNA Binding Superfamily AT5G42700 48.739 1.20e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo01g1094 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1094 - - ahf:112798347 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1094 01 14627655 14629802 Amo11g0748 11 15405679 15408724 hybridization