Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1072 ATGAGCTTTCAGGACATTGAATCTGGCCGTCCCTTCGGTGGTTCGAGGCGTGGCCTCATCAATGGGAAGCAAGATCCTACACAAGCGGTGGCAGCCGGCATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGGCTCGTCAACACCCTTGGAACCCCCAAAGACACCCCCGAGCTCCGTGAGAAGCTCCACAAGACAAGGCTGCATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTAAAGCAAGCTAGTGATATGGATCACCAAGTTGAAGTTAATCCAAGCAAGAAGATAGCAGATGCCAAACTCGCAAAAGATTTTCAGGCCGTACTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGAGAAACAGCGTATACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCGAGCTATACAGCTAGTGAAGTAGATACCAGTTCTGATACGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATCGGCGAGGTTAATGAGATTTTCAAAGATCTTGCTGTGCTCGTCCATGAGCAAGGAGCCATGATTGATGACATTGGCTCCAACATTGAGAACTCTCATGCTGCAACTGCACAAGCAAAATCTCAACTTGCCAAAGCTTCAAAAACCCAAAGATCAAATTCGTCTTTGACATGTTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTCATTATAGTTCTGGCCGCCTAG 825 0.4679 MSFQDIESGRPFGGSRRGLINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDMDHQVEVNPSKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDTSSDTTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1072 274 CDD SynN 24 150 IPR006011 GO:0016020
Amo01g1072 274 Pfam SNARE domain 218 269 IPR000727 -
Amo01g1072 274 PANTHER SYNTAXIN 6 273 IPR045242 -
Amo01g1072 274 Gene3D - 21 134 - -
Amo01g1072 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Amo01g1072 274 Gene3D - 175 274 - -
Amo01g1072 274 CDD SNARE_Qa 201 242 - -
Amo01g1072 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo01g1072 274 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g1072 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Amo01g1072 274 SMART tSNARE_6 176 243 IPR000727 -
Amo01g1072 274 SMART SynN_4 16 128 IPR006011 GO:0016020
Amo01g1072 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 6 273 - -
Amo01g1072 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1072 Amo-Chr1 13981042 13985846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1072 1 262 SNARE and Associated Proteins AT5G46860 80.153 2.15e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1072 - K08488 gsj:114391232 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0110 05 1242787 1248823 Amo01g1072 01 13981042 13985846 PCT
Amo01g1072 01 13981042 13985846 Amo05g0110 05 1242787 1248823 PCT