Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1068 ATGTCATCYTCGGAGGCGGGCTACAAYACGCCCGAKGWAGAATACAATACCCCKCCGGCGTTAATAGCATTCACGTTAGCCGTCCTAGTGTTATGCTTCATGGCCTTCAGCGTTGTGTACTTGTGCAAGTACTGCTTTGTAAGCGTCCTCCACTCTTGGGCCTTCCACCAGAGTTTCTCTGGTTCATTGCTTCGTCCTTCATCAACAAATAGGTCTTCCTCAATAGGCCTTGATCCTTCCATGCTTCAAACGTTCCCAACCTTTGTGTATTCCTCCGTAAAGGACCTCCGCAGCCTAGAATGTGCCATTTGCTTGCTCGAATTCWAGGACGACAGCTTGATTCGCCTCTTGACTATTTGCTGCCATGTTTTCCACCAAGAATGCATTGACCTTTGGCTTTATTCCCACAAGACTTGCCCTGTTTGCCGCACAAACCTCGAGGAGCATAAATCAGGAGAAGGAGAAATCAGTGGTAGCAGTGGTGGTGCTGACATACGCATTGACATAATAACAGACATGGCCACCCAAGGTAGTGGGGGTCATCAGGGTACAGGAGGAGAGGATCATTCGTGTAYTGARGAACATMATCATAATAATAATGGGGCGATCAGACCATCAAGTAATCATCTATCTGGTATCCATCAGCAATCAAGTACGTTGAGCTGTTGCGGATATGGCACTGAGCAACAATGTGATAGGAGGCATCAACTTAGGGGCGGTGCTGCTGTCGATTCCAATAATTGGGACCGGGATATGGCTGAGCACAGAGGTAGCGGAATCGTGTGTGAAGGTTCTAGAATGGGCGGTGCTTATGTTGGGGATTGTGATGATGGTGGTGGGTCTGGCYGGATTGGCGGGAGCATTATTGTGGAGAGTCCAGCAGGTGAGGGTGATGATATTCTACCTGGTAGCCATGCTGGTGCTAATCGTGTTGCTGWTGTGCCTGGTGGTGTTGGTGTACACGGTCACCCTTAG 975 0.4872 MSSSEAGYNTPXXEYNTPPALIAFTLAVLVLCFMAFSVVYLCKYCFVSVLHSWAFHQSFSGSLLRPSSTNRSSSIGLDPSMLQTFPTFVYSSVKDLRSLECAICLLEFXDDSLIRLLTICCHVFHQECIDLWLYSHKTCPVCRTNLEEHKSGEGEISGSSGGADIRIDIITDMATQGSGGHQGTGGEDHSCXEEHXHNNNGAIRPSSNHLSGIHQQSSTLSCCGYGTEQQCDRRHQLRGGAAVDSNNWDRDMAEHRGSGIVCEGSRMGGAYVGDCDDGGGSGXIGGSIIVESPAGEGDDILPGSHAGANRVAXVPGGVGVHGHP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1068 324 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Amo01g1068 324 PANTHER RING FINGER DOMAIN-CONTAINING 6 238 - -
Amo01g1068 324 Pfam Ring finger domain 100 143 IPR001841 -
Amo01g1068 324 MobiDBLite consensus disorder prediction 176 213 - -
Amo01g1068 324 CDD RING-H2_EL5_like 100 143 - -
Amo01g1068 324 PANTHER RING-H2 FINGER PROTEIN ATL29 6 238 - -
Amo01g1068 324 SMART ring_2 101 142 IPR001841 -
Amo01g1068 324 SUPERFAMILY RING/U-box 81 149 - -
Amo01g1068 324 MobiDBLite consensus disorder prediction 282 308 - -
Amo01g1068 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1068 Amo-Chr1 13891154 13894957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1068 19 160 Rapid Response to Elicitors AT2G35000 37.671 1.18e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1068 - - ahf:112732715 312.383