Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1058 ATGGAGTCTGGTGAGAGTGGGGGTTCGTCGGTTCGAGAGGTGCGTGCAAATGGAAACAGCATTAAAACATCAGAAGTTGAGGCTAAGCTTGATGAAGGGAATATTCAAGAAGCAGAATCAGCATTGCGAGAAGGCTTGTCTCTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGCTAGAGTATCAACGAGGTAATGTCGAAGGGGCTCTTCGTGTGTTTGATGGGATAGATCTTCAAGCAGCCATACAGCGATTGCAATCTTCCCTTTCTGATAAACCAGCCAAGAAAGGAGGTGGCTCAACTTCCACGAGCTCTCAGCATGCTGCTAGTTTGGTGCTCGAAGCCATCTTCTTAAAATCCAAGTCTCTACAAAAGCTGGGAAAGTTCACTGATGCTGCTAGTGAGTGCAAGCGTGTACTTGATGCTGTTGAAAAGATATTTTCTCAAGGTATACCTGATGCTCAAGTGGACAATAAATTGCAAGAGATAGTCAGCCATGCCGTAGAGCTCCTTCCAGAGCTTTGGAAAGAGGCCGGTTGCTATCCCGAGGCAATATCTGCATATAGGAATTCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTATGTTTTTGCTGTACAGCGGCGTGGAGGCAAATCCACCCAGTTTGGCAGTTCAGACTGAAGGGTCATATGTACCTAAAAATAATCTGGAAGAGGCGATTCTGCTTCTAATGATTCTTGTGAGAAAGTTTTGTCTTGGAAAGACAAAATGGGACCCCTCGGTAATGGAACACCTGACATTTGCACTTTCAGCATGTGGCCAAACCTCTGTTTTAGCAAAACAACTTGAAGAGTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCATTAGCGCTGTCTCTCAGTGCAGCTGGACAAAGCAAAACTGCTTTGGATCTGCTAAGAAAGTCTCTGCACCGACATGAACGACCGAATGACATGATAGCATTATTATTGGCTGCTAGAATTTGCAGTGAGGATCCTCATCTTGCTGCAGAGGGTGCAGGCTATGCCCAGAGGGCAGTCAATAATGCTCGGGGTCTAGACGAGCATTTAAGAGGTGTAAGCCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGCTGCTTCCTCTGACTACGAGAGGTCTCATCTTCAGGCCAAAGCTCTCCAATCATTGGACGAGGCAGCTAGATTGGAGCAAAAGAATTCTGATCTAATTTTTGAGTTAGCTGTTCAATATGCAGAGCACCGAAATCTGCCTGCAGCTTTACGCTATGCGAAGCAGTTCTTTGATGAAACTGGTGGATCTGTATTGAAAGGATGGAGATTGCTGGCTCTAGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTGGTGACAGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAAGGTCCACTTCTCAGGTTGAAAGCGAAGCTGAAGATTTCCCAATCACGACCCATGGATGCTATTGAAACTTACCGATACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGACCTCTCAGAATTAGTTCACAGGTGGATGACAAGGTAGACGAATATGATGTCTGGCATGGCCTCGCGAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATATGTTTGCAAAAGGCCAGAGAATTAAAGGAGCACTCAGCAGCTACAGCTCACACTGAAGGTGTTATGTTAGACGGCCGCGGACAAGATCAAGAAGCTCTGGCCACTGCAACAAATGCTACAGTACTTGAATCAAGCCATGTTCCAAGCAAGATATTGATGGGTGCTTTGATGATGAAAATGGGTCCGAAAGCTTTGCCTGCTGCTAGAAGCCTTCTTACTGATGCACTCAGAGTCGAACCAACAAATCGTATGGCTTGGTATCACTTGGGACTGACACACAAGTCTGATGGCCGAATGGCCGATGCTGCTGATTGCTTCCAGGCAGCATTCATGCTTGAAGAAACAGATCCCATTGAAAGTTTCAGCACTTTGCTGTGA 2070 0.4546 MESGESGGSSVREVRANGNSIKTSEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSLSDKPAKKGGGSTSTSSQHAASLVLEAIFLKSKSLQKLGKFTDAASECKRVLDAVEKIFSQGIPDAQVDNKLQEIVSHAVELLPELWKEAGCYPEAISAYRNSLLSQWNLDNDCCARIQKAFAMFLLYSGVEANPPSLAVQTEGSYVPKNNLEEAILLLMILVRKFCLGKTKWDPSVMEHLTFALSACGQTSVLAKQLEELIPGVYHRIDRWNSLALSLSAAGQSKTALDLLRKSLHRHERPNDMIALLLAARICSEDPHLAAEGAGYAQRAVNNARGLDEHLRGVSLRMLGLCLGKQAKAASSDYERSHLQAKALQSLDEAARLEQKNSDLIFELAVQYAEHRNLPAALRYAKQFFDETGGSVLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQRKSFGPLRISSQVDDKVDEYDVWHGLANLYASLSHWKDAEICLQKARELKEHSAATAHTEGVMLDGRGQDQEALATATNATVLESSHVPSKILMGALMMKMGPKALPAARSLLTDALRVEPTNRMAWYHLGLTHKSDGRMADAADCFQAAFMLEETDPIESFSTLL* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1058 689 MobiDBLite consensus disorder prediction 1 25 - -
Amo01g1058 689 SMART tpr_5 543 576 IPR019734 GO:0005515
Amo01g1058 689 SMART tpr_5 647 680 IPR019734 GO:0005515
Amo01g1058 689 SMART tpr_5 114 147 IPR019734 GO:0005515
Amo01g1058 689 SMART tpr_5 298 331 IPR019734 GO:0005515
Amo01g1058 689 SMART tpr_5 454 487 IPR019734 GO:0005515
Amo01g1058 689 SUPERFAMILY TPR-like 493 677 IPR011990 GO:0005515
Amo01g1058 689 Gene3D Tetratricopeptide repeat domain 24 393 IPR011990 GO:0005515
Amo01g1058 689 PANTHER CALMODULIN-BINDING PROTEIN 1 688 - -
Amo01g1058 689 MobiDBLite consensus disorder prediction 1 24 - -
Amo01g1058 689 Coils Coil 397 417 - -
Amo01g1058 689 Pfam Tetratricopeptide repeat 631 673 - -
Amo01g1058 689 SUPERFAMILY TPR-like 401 503 IPR011990 GO:0005515
Amo01g1058 689 PANTHER PROTEIN NPG1 1 688 IPR043376 -
Amo01g1058 689 ProSiteProfiles TPR repeat profile. 647 680 IPR019734 GO:0005515
Amo01g1058 689 Gene3D Tetratricopeptide repeat domain 402 685 IPR011990 GO:0005515
Amo01g1058 689 SUPERFAMILY TPR-like 115 440 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1058 Amo-Chr1 13784731 13788191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1058 11 689 Calmodulin-binding Proteins AT2G43040 72.926 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1058 K21843 - gmx:100811897 1068.91