LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g1036	ATGCCGAGTATATTCTTTGCAAAACCACTACAATACGCCTCTGTGTCACACCCCTTTTGCCACTATCATCTTTGTCGCGCCGTTAGTTGCACTGCTCGGAATGCGTGTAGTGATTTGCGTTTGTTCCGCTGTCGCGGCCTCCATCCCGACGATTCTCTGGGCAGTGCCGGTGCCCTCCACAACCAATTCCCGTTGCTGCAACGCGCGCTTTGCATGTGCCATTTTCTCCTTCGCAGGACCACCGCGACACCCTCCCCTTCGCTATCTGCATCGCCGTCGTCCACCGCAGTACCCTCTCTCTATCTCATTTCTACCTTCTCAATCCGATCAAAGACACTTCCATTAGAAGACATATGCATAAGGAGACACGTCCAAGACACATCGACAAAGACACTTTCATTAGACACAACCATAAAAAAGATACGAAGCTCTTTATCATATCATGCCAATGCGCGCACTAAGACGTCCGTTTGGCTACTCCTATTTGTTTCTTCTATCTCCCTTACCTCAACACACATGGATGAGAAAGCTAAGTCCTCAGATCATGTTGCTGTCATCATTGACCAGCACACTAACCATCCGAAACCCCCTTCCTCCTCCTCCGTGGACAACAAGCCCCCCAAACAACACCCCTTGAGGGTCAAAACCCTTAACCGTCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGACAACATGCTTGGTTTGTTCGCTGGTAATAACGCGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCATGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACAAGTTCCTGAACAAGGTGTTTCAGGGACTGGTGGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTGGTGAAGATGCTGGCATCCTCTTTTCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCGCCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCTGCTCACGGGAGGCGGATCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTGAAGGAGAAGCAGGAGAGGTTCGGGGGTTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCATCCGCCTGGAGCGTCAAGAGGCTCGTCAACTATGTTCGCTCTTCCGGCCTCTCCACCATCTCCAGGACCGTCGATGATTTCACCACCGCCGAGTCTGAGATCAACAGTGAATGGGAAGCTAGAAATTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTTAGTGTGATAATAATCATTGTGATCCTTTTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGATGGTGTTCATATGATTGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTCAGATACGACAACGAGAAAATATACTACCCTAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCGGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGCTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCTTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATGGCAGACTTGTCTTTCAATCATGA	2301	0.4807	MPSIFFAKPLQYASVSHPFCHYHLCRAVSCTARNACSDLRLFRCRGLHPDDSLGSAGALHNQFPLLQRALCMCHFLLRRTTATPSPSLSASPSSTAVPSLYLISTFSIRSKTLPLEDICIRRHVQDTSTKTLSLDTTIKKIRSSLSYHANARTKTSVWLLLFVSSISLTSTHMDEKAKSSDHVAVIIDQHTNHPKPPSSSSVDNKPPKQHPLRVKTLNRLSFSKPKSRILDNMLGLFAGNNADKEDAHGGFGDMEVVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRLLTGGGSKSMPARSRLNKLKEKQERFGGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFTTAESEINSEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNGRLVFQS*	767

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g1036	766	Gene3D	-	595	644	IPR023408	-
	Amo01g1036	766	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN	177	233	-	-
	Amo01g1036	766	MobiDBLite	consensus disorder prediction	192	206	-	-
	Amo01g1036	766	MobiDBLite	consensus disorder prediction	190	210	-	-
	Amo01g1036	766	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN	255	759	-	-
	Amo01g1036	766	Pfam	Mechanosensitive ion channel	536	739	IPR006685	GO:0016020\|GO:0055085
	Amo01g1036	766	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	255	759	IPR016688	-
	Amo01g1036	766	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	177	233	IPR016688	-
	Amo01g1036	766	SUPERFAMILY	Sm-like ribonucleoproteins	586	644	IPR010920	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g1036	Amo-Chr1	13499481	13508273	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g1036	257	755	Mechanosensitive Ion Channel Family	AT5G12080	47.151	5.43e-158	474

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g1036	K22048		-	gmx:100813521	845.884

Showing 1 to 1 of 1 entries