Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1032 ATGGAGTCTGGTGAGAGTGGGGGTTCGTCGGTTCGAGAGGTGCGTGCAAATGGAAACAGCATTAAAACATCAGAAGTTGAGGCTAAGCTTGATGAAGGGAATATTCAAGAAGCAGAATCAGCATTGCGAGAAGGCTTGTCTCTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGCTAGAGTATCAACGAGGTAATGTCGAAGGGGCTCTTCGTGTGTTTGATGGGATAGATCTTCAAGCAGCCATACAGCGATTGCAATCTTCCCTTTCTGATAAACCAGCCAAGAAAGGAGGTGGCTCAACTTCCACGAGCTCTCAGCATGCTGCTAGTTTGGTGCTCGAAGCCATCTTCTTAAAATCCAAGTCTCTACAAAAGCTGGGAAAGTTCACTGATGCTGCTAGTGAGTGCAAGCGTGTACTTGATGCTGTTGAAAAGATATTTTCTCAAGGTATACCTGATGCTCAAGTGGACAATAAATTGCAAGAGATAGTCAGCCATGCCGTAGAGCTCCTTCCAGAGCTTTGGAAAGAGGCCGGTTGCTATCCCGAGGCAATATCTGCATATAGGAATTCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTATGTTTTTGCTGTACAGCGGCGTGGAGGCAAATCCACCCAGTTTGGCAGTTCAGACTGAAGGGTCATATGTACCTAAAAATAATCTGGAAGAGGCGATTCTGCTTCTAATGATTCTTGTGAGAAAGTTTTGTCTTGGAAAGACAAAATGGGACCCCTCGGTAATGGAACACCTGACATTTGCACTTTCAGCATGTGGCCAAACCTCTGTTTTAGCAAAACAACTTGAAGAGTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCATTAGCGCTGTCTCTCAGTGCAGCTGGACAAAGCAAAACTGCTTTGGATCTGCTAAGAAAGTCTCTGCACCGACATGAACGACCGAATGACATGATAGCATTATTATTGGCTGCTAGAATTTGCAGTGAGGATCCTCATCTTGCTGCAGAGGGTGCAGGCTATGCCCAGAGGGCAGTCAATAATGCTCGGGGTCTAGACGAGCATTTAAGAGGTGTAAGCCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGCTGCTTCCTCTGACTACGAGAGGTCTCATCTTCAGGCCAAAGCTCTCCAATCATTGGACGAGGCAGCTAGATTGGAGCAAAAGAATTCTGATCTAATTTTTGAGTTAGCTGTTCAATATGCAGAGCACCGAAATCTGCCTGCAGCTTTACGCTATGCGAAGCAGTTCTTTGATGAAACTGGTGGATCTGTATTGAAAGGATGGAGATTGCTGGCTCTAGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTGGTGACAGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAAGGTCCACTTCTCAGGTTGAAAGCGAAGCTGAAGATTTCCCAATCACGACCCATGGATGCTATTGAAACTTACCGATACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGACCTCTCAGAATTAGTTCACAGGTGGATGACAAGGTAGACGAATATGATGTCTGGCATGGCCTCGCGAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATATGTTTGCAAAAGGCCAGAGAATTAAAGGAGCACTCAGCAGCTACAGCTCACACTGAAGGCAAGAACAGAACCTTTTTGCTGTTAGATTTTCTATTTCGGCATGTTGAACATACTTTGTGA 1812 0.4487 MESGESGGSSVREVRANGNSIKTSEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSLSDKPAKKGGGSTSTSSQHAASLVLEAIFLKSKSLQKLGKFTDAASECKRVLDAVEKIFSQGIPDAQVDNKLQEIVSHAVELLPELWKEAGCYPEAISAYRNSLLSQWNLDNDCCARIQKAFAMFLLYSGVEANPPSLAVQTEGSYVPKNNLEEAILLLMILVRKFCLGKTKWDPSVMEHLTFALSACGQTSVLAKQLEELIPGVYHRIDRWNSLALSLSAAGQSKTALDLLRKSLHRHERPNDMIALLLAARICSEDPHLAAEGAGYAQRAVNNARGLDEHLRGVSLRMLGLCLGKQAKAASSDYERSHLQAKALQSLDEAARLEQKNSDLIFELAVQYAEHRNLPAALRYAKQFFDETGGSVLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQRKSFGPLRISSQVDDKVDEYDVWHGLANLYASLSHWKDAEICLQKARELKEHSAATAHTEGKNRTFLLLDFLFRHVEHTL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1032 603 MobiDBLite consensus disorder prediction 1 24 - -
Amo01g1032 603 SMART tpr_5 543 576 IPR019734 GO:0005515
Amo01g1032 603 SMART tpr_5 114 147 IPR019734 GO:0005515
Amo01g1032 603 SMART tpr_5 298 331 IPR019734 GO:0005515
Amo01g1032 603 SMART tpr_5 454 487 IPR019734 GO:0005515
Amo01g1032 603 PANTHER CALMODULIN-BINDING PROTEIN 1 584 - -
Amo01g1032 603 Coils Coil 397 417 - -
Amo01g1032 603 MobiDBLite consensus disorder prediction 1 25 - -
Amo01g1032 603 Gene3D Tetratricopeptide repeat domain 454 584 IPR011990 GO:0005515
Amo01g1032 603 PANTHER PROTEIN NPG1 1 584 IPR043376 -
Amo01g1032 603 Gene3D Tetratricopeptide repeat domain 21 196 IPR011990 GO:0005515
Amo01g1032 603 Gene3D Tetratricopeptide repeat domain 234 447 IPR011990 GO:0005515
Amo01g1032 603 SUPERFAMILY TPR-like 115 572 IPR011990 GO:0005515
Amo01g1032 603 SUPERFAMILY TPR-like 401 575 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1032 Amo-Chr1 13470623 13473877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1032 11 585 Calmodulin-binding Proteins AT2G43040 75.517 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1032 K21843 - gmx:100811897 920.613