Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1030 ATGGGCATTTGTCTGATGAAACAGAAATGGCTATGGCTTCTTTATGGTCTGATGATAAATATTCTGATCAATGAAAATGGTGCACTCAGTCCTGATGGTCAGGCACTTCTCAGCTTCAGGACATCAGTTGTTAGCTCAGATGGTGTGTTGTTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAGATGTGATCCAAAAACCAAGAGAGTAACCCATCTGGCTTTATCTCACCATAAGTTAAGTGGGTCTTTGTCAGCTGACCTTGGAAAGCTAGATCATTTGAGGGTTCTTGCTCTTCACAACAACAACTTCTATGGGACCATTCCATCAGAACTGGGAAACTGCACTGAATTGCAGGGATTATATCTACAGGAAAATTACCTTAGTGGCATGATTCCAGGCGAAATAGGAAATCTTTCACAGCTTCAAAGTTTGGATATATCAAGCAACTCCCTCAGTGGAAACATACCAGCATTGCTTGGAAAATTGTACAACATAAAAAATTTCAATTTATCATCCAATTTTCTGTCTGGACCAATACCGTCTGATGGTGTGCTTGCCAACTTTACTGGAAGCTCCTTCATTGGAAATCGTGGTCTGTGTGGGGTGCAAATTGATGTGACATGTCCTGGATCAAACCCTCAATCTCCAACCTCAGATCAAAATGGAAAGAAGAAATATTCAGGTCGGCTACTTATCAGCGCATCAGCAACTGTGGGTGCTCTTCTTTCGGTGGCACTGATGTGTTTCTGGGGTTGTTTTCTTTACAAGAAGTTTGGTAAAAAGGACAGAATAAGTCTGGCAATGGATGTGGGTGAAGGTGCATCAATTGTGATGTTTCACGGAGATCTACCTTATTCTTCAAAAGATATCATTAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGGGTTGGAGGGTTTGGAACAGTCTACAAACTTGCAATGGATGATGGGAATGTGTTTGCTTTGAAAAGGATTGTGAAGTTAAATGAGGGTTTCGATCGGTTTTTTGAGAGAGAACTTGAAATTCTGGGAAGCATAAAACATCGCCATCTAGTGAACTTGCGGGGATATTGCAATTCACCTACATCAAAGTTGTTAATATATGATTACTTACCTGGTGGCAGTCTTGATGAAGCTCTTCACGAAAAATCTGAGCAACTAGACTGGGATGCACGCTTGAATATAATCATTGGAGCTGCAAAAGGGCTCGCCTATTTACACCATGATTGCTCCCCTAGGATCATACACCGTGACATAAAATCAAGCAACATTTTGCTTGATGGAAACCTTGATGCTCGGGTGTCTGATTTTGGACTCGCAAAACTTCTAGAGGATGAAGAATCTCACATCACAACTATTGTAGCTGGAACGTTTGGTTATCTTGCACCAGAGTATATGCAAAGTGGTAGAGCAACTGACAAGAGTGATGTTTATAGTTTTGGGGTCCTGACTCTTGAAGTTCTGAGTGGAAAGCGACCAACAGATGCATCATTTATAGAAAAGGGCCTCAATGTTGTTGGTTGGTTGAATTTTCTAATTTCGGAAAATAGGCGACGGGAAATTGTGGATCCACTATGCGAGGGGGTGCAAATGGAGACCCTTGATGCCTTGCTTTCTGTGGCTATTCAATGTGTTTCATCAAATCCAGAGGACCGACCGAATATGCACCGAGTGGTCCAGTTCTTTGAGTCAGAGATCATGACCCCATGCCCAAGTGACTTCTATGACTCAAGCTCTGACTAG 1767 0.4211 MGICLMKQKWLWLLYGLMINILINENGALSPDGQALLSFRTSVVSSDGVLLQWRPEDPDPCKWKGVRCDPKTKRVTHLALSHHKLSGSLSADLGKLDHLRVLALHNNNFYGTIPSELGNCTELQGLYLQENYLSGMIPGEIGNLSQLQSLDISSNSLSGNIPALLGKLYNIKNFNLSSNFLSGPIPSDGVLANFTGSSFIGNRGLCGVQIDVTCPGSNPQSPTSDQNGKKKYSGRLLISASATVGALLSVALMCFWGCFLYKKFGKKDRISLAMDVGEGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGVGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRHLVNLRGYCNSPTSKLLIYDYLPGGSLDEALHEKSEQLDWDARLNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATDKSDVYSFGVLTLEVLSGKRPTDASFIEKGLNVVGWLNFLISENRRREIVDPLCEGVQMETLDALLSVAIQCVSSNPEDRPNMHRVVQFFESEIMTPCPSDFYDSSSD* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1030 588 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Amo01g1030 588 ProSiteProfiles Protein kinase domain profile. 303 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1030 588 SMART serkin_6 303 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1030 588 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Amo01g1030 588 Gene3D Transferase(Phosphotransferase) domain 1 379 576 - -
Amo01g1030 588 Gene3D Phosphorylase Kinase; domain 1 274 378 - -
Amo01g1030 588 SUPERFAMILY L domain-like 31 195 - -
Amo01g1030 588 Pfam Protein kinase domain 305 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1030 588 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Amo01g1030 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Amo01g1030 588 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 588 IPR031071 GO:0004672|GO:0005524|GO:0030244
Amo01g1030 588 SUPERFAMILY Protein kinase-like (PK-like) 287 570 IPR011009 -
Amo01g1030 588 PANTHER RECEPTOR-LIKE PROTEIN 55 3 588 - -
Amo01g1030 588 ProSitePatterns Protein kinases ATP-binding region signature. 309 335 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1030 Amo-Chr1 13455386 13464120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1030 1 579 Receptor kinase-like Gene Family AT2G35620 74.483 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Amo01g1030 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1030 - - gmx:100819230 1055.43