Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1004 ATGGCTCCCAATCCAAGAGTTGTTCAGGCCTTTAATGCTATGAAGGCATTAGGAATTTCAGCTGAAGAGGTGAAGCCGGTGTTGGCAGAGTTGTTAAGAGTCTACGATAAAAATTGGGAACTTATTGAAGAGGACAATTATCGGACACTTGTAGATGCATACTTTGACTTCAAAGAAGATAAGGGAACAGATGCTAAGAAAAAAGTGTCTGTCAATTTTCATGCTCGAGAAAGACCAAAACAGAAGCTGCACTTGATAGATGATGATGATGATGATAACCAGGTTTTGTCAACAACAAACAAGTCGAGCCAAAAGTTATCCATTGCAGATAGGAAAACACCTCCAGGTAATTCTTCACAAGAAATCATTGAGCCATCTCAAGCTTCTAAGCAAGATAGCAAGCCGAGAACTAGTTCAGAAGCATCACATGCAAGGTTGATGAAGGTAGAAAGGGTTTCCAGTTCACCATGCAACGCACCTAAATATAGAAAAACGTATTACGACATAGCACCATCTTCAGGGCACTCTGTTGATTATGAGAAAGAGCTAGTGAAACCCAGAACTAAGAAACCAAAGTTACAGACTCAGCCTATTTCAACAAATCATGACGGATTATTTGATGCTTCCTCATCATGCAATAATAATGCCACAACTAGCACGGGAAATATCACTATTGCTTCTTCACCCCGTGGAGAAGTTAAATTGTCTTTAAACTGCAACTCTGCCTTGGCTCAACCGGACTTCTGTAATCCTAATTTGGATACTGTGATGAAGTTCATGGAGGAGAAGTACCTTAGCTCTTGCATGACTCAGGATCCTCAGTTTTCAATGGTGAAGCTACTAAATGGTTTATGCAGGAGCTATCTGATGTTGGGACATAAAAAACGTTCGAATTTCAGGTCTTCTTCCAGCAACTTGGCAGTTACTCAAGATGAAAGGAGTTCCTCTCAGTTTATCAATGACATAACAAGAGGTTCAGAAGAGGTGAAAATCCCATTAATAGATGAAAATGGCAGTGAGGACTTGCCAAAATTTAATTATATACCGCAAAATATAATATACCAAAGTGCTAATGTAAATATTTCATTGGCTCGAATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCTGCTTCACTGCCTTGTGCATGTGCCCGTGAAACTGGTGGAGAGTTTGCTTACACTCCTGAAGGTGTGTTGAAAGAAGAGTTTCTTAAAGCTTGCATTTCCATGAAGAATGAACCTCAAGATCGTCATTTCGTGTATTGTCAAGAGTGCCCATTGGAGAAGTCTAAGAATGAGTTCATGCCCGAACAATGCAAAGGGCATATGGTTAGGAAGTTTATCAAAGAATGCTGGAGGAAATGTGGCTGTGACATGCGATGTGGAAATCGAGTAGTACAAAGAGGTATAAGATGCAAATTGCAGGTAAGTGGAACTTTTCATTCACAGGTTCCTCATTGGGGACTCATTGGATGGCAGTTGACGCCCACTGAGGCTCTTCCTCAAACTCAGCTAAAACTGATTGTCGGATTTCCAATGGAAGTCCATGGAACTTGCAAATTCTTTGTCCAAACTAAACAATCCCGGCAACGGCGCCACAAAACTTGGTCACTCGGTTGTCAGGGCGATCACCATGCATCGTGCAATCAGAAATCCAAGAGATATTCACCACAATCGAAGGAGGGTTTTGTTCTTAGATTTAGATTTAGTATTCATCTTCTTACTACTTCTATCTTCTCAATTCCTTGTAGTTCATTCATTCTTCTCATATTCTTCATGGTGTAA 1800 0.4061 MAPNPRVVQAFNAMKALGISAEEVKPVLAELLRVYDKNWELIEEDNYRTLVDAYFDFKEDKGTDAKKKVSVNFHARERPKQKLHLIDDDDDDNQVLSTTNKSSQKLSIADRKTPPGNSSQEIIEPSQASKQDSKPRTSSEASHARLMKVERVSSSPCNAPKYRKTYYDIAPSSGHSVDYEKELVKPRTKKPKLQTQPISTNHDGLFDASSSCNNNATTSTGNITIASSPRGEVKLSLNCNSALAQPDFCNPNLDTVMKFMEEKYLSSCMTQDPQFSMVKLLNGLCRSYLMLGHKKRSNFRSSSSNLAVTQDERSSSQFINDITRGSEEVKIPLIDENGSEDLPKFNYIPQNIIYQSANVNISLARISDEGCCSDCSGNCLSASLPCACARETGGEFAYTPEGVLKEEFLKACISMKNEPQDRHFVYCQECPLEKSKNEFMPEQCKGHMVRKFIKECWRKCGCDMRCGNRVVQRGIRCKLQVSGTFHSQVPHWGLIGWQLTPTEALPQTQLKLIVGFPMEVHGTCKFFVQTKQSRQRRHKTWSLGCQGDHHASCNQKSKRYSPQSKEGFVLRFRFSIHLLTTSIFSIPCSSFILLIFFMV* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1004 599 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 487 - -
Amo01g1004 599 Gene3D - 1 60 IPR043017 -
Amo01g1004 599 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Amo01g1004 599 MobiDBLite consensus disorder prediction 96 135 - -
Amo01g1004 599 MobiDBLite consensus disorder prediction 185 205 - -
Amo01g1004 599 Gene3D SET domain 296 509 IPR046341 -
Amo01g1004 599 ProSiteProfiles Pre-SET domain profile. 375 474 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1004 599 SMART preset_2 319 461 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1004 599 MobiDBLite consensus disorder prediction 88 152 - -
Amo01g1004 599 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 487 - -
Amo01g1004 599 Pfam Pre-SET motif 322 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo01g1004 599 SUPERFAMILY SET domain 329 495 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1004 Amo-Chr1 13150539 13164281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1004 321 497 Su(var)3-9 homologs AT5G04940 24.294 3.84e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1004 - - gsj:114402909 560.066