Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0983 ATGACTCGCATGCTAAGAATCCTCCAGTCCGCCACCGCCAACAACGCCACCACCACCACCGCCATAGCTGCTGCCGTGCCACCGGCCGAGGCAGCGTCAGTCGAGTCCGACTTCGTCGTCATCCTCGCTGCGCTGCTCTGCGCTCTCATCTGCGTCGTCGGCCTCATCGCCGTCGCACGATGCGCCTGGCTCCGCCGCGTCCCCGTGGCAGGCACCGGAGCATCTCCACATCAGGCACTCGCCAACCGTGGACTCAAGAAGAAGTGGACAGCCTCATCGGAATGCTCTATTTGTCTGGCGGAATTCGCCGCCGGCGACGAGGTCAGGGTGCTTCCGCAGTGCGGCCATGGCTTCCACGTGGCATGTATTGACACGTGGCTGGGATCACACTCCTCCTGCCCGTCCTGCCGCGCCGTCCTGGCCGTTGGGAGATGCCAAAAATGCGGCCAGTTTCCGGCTGTTCCAAACGGCGCTACCGTAGTAGCAATTGCCGGCGAAACGGAATTAAAATCTGTCGTCGGCAACAGCAATGGTAACGCCGAGAGTAATATCCGGCATGCTAGCAATGATTTCTTGCCTTAA 582 0.6082 MTRMLRILQSATANNATTTTAIAAAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRVPVAGTGASPHQALANRGLKKKWTASSECSICLAEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAVLAVGRCQKCGQFPAVPNGATVVAIAGETELKSVVGNSNGNAESNIRHASNDFLP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0983 193 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 181 - -
Amo01g0983 193 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 23 181 - -
Amo01g0983 193 Pfam Ring finger domain 94 137 IPR001841 -
Amo01g0983 193 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Amo01g0983 193 CDD RING-H2_PA-TM-RING 94 137 - -
Amo01g0983 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 140 IPR013083 -
Amo01g0983 193 SMART FANCL_C_2 91 145 - -
Amo01g0983 193 SUPERFAMILY RING/U-box 91 141 - -
Amo01g0983 193 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0983 Amo-Chr1 12956982 12957662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0983 4 148 C3H Transcription Factor Family AT1G20823 55.030 7.28e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0983 - - gmx:100787383 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0260 05 3263481 3264873 Amo01g0983 01 12956982 12957662 PCT
Amo01g0983 01 12956982 12957662 Amo05g0260 05 3263481 3264873 PCT