Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0978 CAGTGCCCAGATTTTGTAATTTCCTACACTTCAAGTGGAAAGACTCATGCTCTCAGTGTTGGCAAAATTGTGAAAATCGCCGTAGAAGCCGCAGTTAAAGATGTAAATTCTGATCCATCAATTCTTGGCAAAACTCAGCTCAAGCTCTCACTTCAAGAAGATTCCAAATATAGAGGATTCTTGAGCATTGCTGAGGCATTGCAGCTCATGGCAACACACACTGTGGCCATAATTGGCCCACAGACCTCCACAACAGCTCATGTCATATCTCACATTGCGAACGAGCTTCGAGTTCCCCTGCTGTCGTTTACAGCCACTGACCCCACCCTTTCTTCGCTTCAGTTCCCATTCTTCATTCGGACATCTTTTAATGATATGTATCAGATGACTGCAATAGCAGATCTTGTTAACTACTATGGTTGGAGGGAGGTTATTGCAGTCTATGGTGATGATGATCATGGGAGGAATGGAATTGGTGCCTTAGGGGACAAGCTAGCTGAGAGGCGCTGCAAGATCTCGTTTAAAGCTCCTATGAGTCCTGAGGCAACCAGGGAGGAGATCACTGATGTGCTTGTTCAGGTAGCTCTGGCTGAATCGCGGGTTATAGTCCTTCACACAAGTACTACTTGGGGGCCGAAAGTGCTAAATGTGGCGAAATCTCTTGGAATGATGGAAAATGGTTATGTCTGGATAGCCACAACTTTTCTGTCTACCGGGATAGATATAAGTTCTCCACTTTCTTTGAGTGTAATGGATGACATTCAAGGAGTTATTGCGCTACGAATGTATGTGCCGGATTCAAAGCTTAAGAGATCTTTCATTTCGAGGTGGAAAAACTGGACTAATGGCTCCCTTGGATTGAGTACTTATGCTATCTTTGCATATGATACTGTCTATGTTCTTGCTCATGCGCTTGCTGCATTTTTTAAACAAGGGAACCGAATCACCTTTTCATCTGATTCAAAGACATCTCTAATACATGGTGACAACATGCATCTTGATGCTGTCAAGATATTCAACGAAGGAAAACTGCTGCGAAAAAGTATCTACAAGGTTAACATGACCGGTGTAACAGGTCACTTCAAGTATACATCTGATGGAAACCTTGCAAATCCGGCATATGAAATCATCAATGTGGTTGGAACAGGGACTAAGAGGATTGGTTATTGGTCTAATCACTCTGGACTATCATCTGTAAGTCCTGAAGAACTTCATTCAAAGCCGGCTAGTCATTCAAGTTCAAGTCAAAAGCTACTATCTGTGATTTGGCCAGGGGACACAACACAGAAACCTCGCGGTTGGGTTTTTCCAAACAATGGAAGGATGCTAAAAATTGGAGTACCAAAAAGGATCAGTTACCGCGAATTCGTCTCACAAGTAAAAGGCACTGATATGTTCAAGGGGTTCTGCATTGATGTCTTTCTTTCTGCAGTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTATTTCGTACGGAGACGGTCACAGCAATCCTAGTAACACTGAACTTGTCCGTCTGATCACCACCGGTTCCGGTCTAGTGGTAGTAGCATCAGTGAAGAAGACAGACTCAAATGCTTGGGCATTCTTGATGCCATTTACTCCAATGATGTGGACTGTCACAGCTATCTTCTTCCTAGTTGTTGGTGCTGTTGTCTGGATTTTAGAGCATAGGCTCAATGATGATTTTAGGGGACCTCCCAAAAAACAAGTAGCCACAATTTTGTGGTTCAGTTTCTCAACCATGTTTTTTGCCCATAGGGAAAACACAGTGAGCACTCTCGGTCGATTCGTGCTGCTTATATGGTTATTCGTAGTTCTCATAATCAACTCGAGTTATACAGCAAGCTTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCAATAAAGGGCATTGAAAGTTTGATAAACAACAATGAGCCTATTGGCTACTTGCAGGGTTCTTTCACTAAAGGTTATTTAGTCAACGAAATTGGCATCGATGCGTCGAGACTTGTAGCTCTAACAACACCAGAAGAATCTGCCACTGCTCTGGACAAAGGTCCCCATAAAGGTGGCATCGCTGCATATGTCGACGAACGTGCATACATAGAGCTGTTCCTTTCAAGCCGCTGCGATTTCAGCATTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCGGTTGACCTGTCAACAGCCATTTTGGAGTTGGCTGAGAACGGCGACCTTCAACGGATCCACGACAAATGGCTTTTGCGCAGTGCTTGCCTGTCGCAAGGTGCGAAGCTCGAAGTGGACAGACTCAAGCTGAGGAGCTTCTGGGGTCTCTACCTACTCTGTGGCTTGGCATGTTTGATTGCTCTCTTCGTATATCTATTTCAAACCATGAAGCAATACAAGAAGCACTACACCGAAGACGACAAGTCGTCGTCCGGTCTAAAGTCCACGCCGTCGCGACTAAGGACTTTCCTTACATTTGTAGATGAAAAGGAAGACACAGTTAAGAGCCGCTCCAAGAGAAGGAAAACGGAGATGGCATCATTCAAAAGTACAAGTGAGGTTGGATCATCCAATAATGGATATTCAGAATCATCTTCTCAGAGAATTGAGTGTACTAATAATGAGACATGA 2646 0.4403 QCPDFVISYTSSGKTHALSVGKIVKIAVEAAVKDVNSDPSILGKTQLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELRVPLLSFTATDPTLSSLQFPFFIRTSFNDMYQMTAIADLVNYYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVLHTSTTWGPKVLNVAKSLGMMENGYVWIATTFLSTGIDISSPLSLSVMDDIQGVIALRMYVPDSKLKRSFISRWKNWTNGSLGLSTYAIFAYDTVYVLAHALAAFFKQGNRITFSSDSKTSLIHGDNMHLDAVKIFNEGKLLRKSIYKVNMTGVTGHFKYTSDGNLANPAYEIINVVGTGTKRIGYWSNHSGLSSVSPEELHSKPASHSSSSQKLLSVIWPGDTTQKPRGWVFPNNGRMLKIGVPKRISYREFVSQVKGTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITTGSGLVVVASVKKTDSNAWAFLMPFTPMMWTVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINNNEPIGYLQGSFTKGYLVNEIGIDASRLVALTTPEESATALDKGPHKGGIAAYVDERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLRSACLSQGAKLEVDRLKLRSFWGLYLLCGLACLIALFVYLFQTMKQYKKHYTEDDKSSSGLKSTPSRLRTFLTFVDEKEDTVKSRSKRRKTEMASFKSTSEVGSSNNGYSESSSQRIECTNNET* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0978 881 PANTHER GLUTAMATE RECEPTOR 17 510 - -
Amo01g0978 881 SUPERFAMILY Periplasmic binding protein-like II 418 758 - -
Amo01g0978 881 Pfam Bacterial extracellular solute-binding proteins, family 3 614 756 IPR001638 -
Amo01g0978 881 Gene3D - 26 371 - -
Amo01g0978 881 Gene3D - 522 651 - -
Amo01g0978 881 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 510 - -
Amo01g0978 881 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 512 867 - -
Amo01g0978 881 Pfam Ligand-gated ion channel 538 789 IPR001320 GO:0015276|GO:0016020
Amo01g0978 881 PIRSF IGluLR_plant 509 881 IPR017103 -
Amo01g0978 881 PIRSF IGluLR_plant 15 512 IPR017103 -
Amo01g0978 881 MobiDBLite consensus disorder prediction 835 881 - -
Amo01g0978 881 CDD PBP1_GABAb_receptor_plant 20 399 IPR044440 -
Amo01g0978 881 Pfam Receptor family ligand binding region 25 381 IPR001828 -
Amo01g0978 881 Gene3D - 124 396 - -
Amo01g0978 881 PANTHER GLUTAMATE RECEPTOR 512 867 - -
Amo01g0978 881 MobiDBLite consensus disorder prediction 835 852 - -
Amo01g0978 881 MobiDBLite consensus disorder prediction 853 881 - -
Amo01g0978 881 Gene3D - 699 763 - -
Amo01g0978 881 SMART GluR_14 444 758 IPR001320 GO:0015276|GO:0016020
Amo01g0978 881 SUPERFAMILY Periplasmic binding protein-like I 17 435 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0978 Amo-Chr1 12890551 12894950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0978 20 847 Ion Channels AT3G51480 58.879 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0978 K05387 - gmx:100788917 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0266 05 3316743 3320670 Amo01g0978 01 12890551 12894950 PCT
Amo01g0978 01 12890551 12894950 Amo05g0266 05 3316743 3320670 PCT