Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0977 TACAAGATGATCAAAGTTTGGGTTCTTGTCATTGTGATGTTCTACAATGGTTTTCCCTCAAAAGGGACAAGCAATAGTAATAATGTTACAAGGCCAAGTACAGTTAATATTGGAGCAATTTTTTCTTTTAATTCAACTATTGGAGGAGTGGCTAAAATTGCAATACAAGCAGCAGTAGATGATATAAATTCCAATGCAACCATTCTCAATGGAACTAAGTTTAATATCTCAATGCAGGACACAAAATTCTCCCCTGGATTTCTAGGAATTATTGACTCATTAATATTGATGGAGAAAGGCACTGTGGCAATAATTGGTCCACAGTACTCAGAAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTGTTAGTCACTTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGAGTCACTGCATTAGGTGATAAGCTTGCTGAAAAACGTTGCAAGATATCATATAAAGCACCCATTAAGCCAAATAATATTAGTCAAGAAGAAATAACCAATGCATTGATTAAAGTAGCTTTGATGGAATCTAAGGTAATAGTCCTACATTTGTTACCTGATTTTGGCTTAAGAGTACTTAAGATTGCTCAATCACTTGGCATGATCAAAAGTGGTTATGCATGGATAGTAACTGATTGGCTTTCTACAATATTAGATTCAAACCCTTCATTGTTATTGTCTACAAGCTCTACCATGAATGATATGCAAGGTGTTATCACCTTGAGAATGCACACACCAGATTCAAGAATCAAGAGCAATTTTGAGTCTAGGGGTGATAGTGATACCCTTCATCTTGATACTATGGGAGTGTTTCTTAATGGTGACATGTTACTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGCCGAACAGAGTTTGCCCAAGATGGAAACCTAATACAATCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTTTGGCCTTCACACTGGTGAACAAGTTTCAAATGATGCAAATTCAAGTGAAGGGCTTTATAGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCTAGCAATGGAAGACATTTGAGAATTGGAGTACCACTTAGGGTTACCTACCATGAGTTTGTGTCAAGAATTGAAGGCACTGACATGTTGTTTGGTGGTTATTGTATTGATTTTGTTCCATTTGGTGATGGTAGAACCGATCCCGTGGTGTCAGAACTTCTAGAACAAATCACAATTGGTGCCTTTGATGCCGTTATTGGGGATATTACTATTACTACAAACAGAAGTAAGATAGTGGATTTCACTCAGCCATATATAGAGTCAGGGTTAGTGGTTGTGGCACCTATCAAGGAATTGAAATCAAGTGCTTGGGCCTTTCTTATACCATTCACTCCAATGATGTGGTTTGTCACAGGAATGCTTTTTCTAATTGTTGGAGTTGTTGTGTGGATTTTAGAGCGGCCCTTTAATGATGACTTTAGAGGACCAATTAGAAGACAACTAGTGACTATTATTTGGTTTAGCTTTTCAACTCTAGTTTTCGCACATAAAGAGAAAACCGTTAGCACCCTTGGTCGCTTAGTCCTAATCATATGGTTGTTTGTGGTTCTAATACTAAGCTCTAGCTACACTGCAAGCCTAACATCAATTCTCACAGTGGAAAAACTCTCTTCCCCAGTGAAAGGAATTGAAAGCTTAGTGATCAACAATGACCGAATTGGTATCATGAGTGGCACATATGCTGAGAATTATCTTAGTGAGGTGTTTAACATACATAGATCAAGGCTTGTTCCTTTCAATTCTCTATCTGAATTTGAGAAGGCTTTGAAGGATGGACAAGACAATGGTGGTGTTGCTGCTATCATAGCTGAGCGTGCATACATGGAATTGTTCCTATCAACTAGATGTCAATTTGGTATTGTTGGTCAAGAATTCACCAAAATGGGATGGGGCTTTGCCTTTCCAAGGGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTATCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGTTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAACAAGGCATTGATAGGCTTGAGACTAAGAGCTTTTGGGGCCTCTTCCTTCTTATTGGCATTGCATGCTTCATTGCCCTCCTTTGCTATCTTATTAGAATGACCTACCGTTTTAGGAGGCACTACTACTCCAATAGTACCAACCTTGAAGTCCCATCATCATCATCATCATCATGCTCTTCTTGTCTTAAATCATTCTTTTCTTTTGTCAATGAAAAGGAAAAGTAA 2490 0.3831 YKMIKVWVLVIVMFYNGFPSKGTSNSNNVTRPSTVNIGAIFSFNSTIGGVAKIAIQAAVDDINSNATILNGTKFNISMQDTKFSPGFLGIIDSLILMEKGTVAIIGPQYSEMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIVSHFQWRDVIAIFIDDDHGRNGVTALGDKLAEKRCKISYKAPIKPNNISQEEITNALIKVALMESKVIVLHLLPDFGLRVLKIAQSLGMIKSGYAWIVTDWLSTILDSNPSLLLSTSSTMNDMQGVITLRMHTPDSRIKSNFESRGDSDTLHLDTMGVFLNGDMLLQKILEVNRTGLTGRTEFAQDGNLIQSSYEIINVIGTGVRRIGFWSNSFGLHTGEQVSNDANSSEGLYSVIWPGQTTQTPRGWVFASNGRHLRIGVPLRVTYHEFVSRIEGTDMLFGGYCIDFVPFGDGRTDPVVSELLEQITIGAFDAVIGDITITTNRSKIVDFTQPYIESGLVVVAPIKELKSSAWAFLIPFTPMMWFVTGMLFLIVGVVVWILERPFNDDFRGPIRRQLVTIIWFSFSTLVFAHKEKTVSTLGRLVLIIWLFVVLILSSSYTASLTSILTVEKLSSPVKGIESLVINNDRIGIMSGTYAENYLSEVFNIHRSRLVPFNSLSEFEKALKDGQDNGGVAAIIAERAYMELFLSTRCQFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCYLIRMTYRFRRHYYSNSTNLEVPSSSSSSCSSCLKSFFSFVNEKEK* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0977 829 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 307 - -
Amo01g0977 829 Pfam Receptor family ligand binding region 53 304 IPR001828 -
Amo01g0977 829 Pfam Receptor family ligand binding region 308 363 IPR001828 -
Amo01g0977 829 Gene3D - 53 307 - -
Amo01g0977 829 SMART GluR_14 418 746 IPR001320 GO:0015276|GO:0016020
Amo01g0977 829 Gene3D - 667 751 - -
Amo01g0977 829 Pfam Ligand-gated ion channel 746 777 IPR001320 GO:0015276|GO:0016020
Amo01g0977 829 PANTHER GLUTAMATE RECEPTOR 14 307 - -
Amo01g0977 829 Gene3D - 314 417 - -
Amo01g0977 829 SUPERFAMILY Periplasmic binding protein-like I 31 410 IPR028082 -
Amo01g0977 829 Gene3D - 151 292 - -
Amo01g0977 829 Gene3D - 516 653 - -
Amo01g0977 829 SUPERFAMILY Periplasmic binding protein-like II 395 746 - -
Amo01g0977 829 Pfam Bacterial extracellular solute-binding proteins, family 3 462 745 IPR001638 -
Amo01g0977 829 PANTHER GLUTAMATE RECEPTOR 311 828 - -
Amo01g0977 829 Gene3D - 418 515 - -
Amo01g0977 829 PIRSF IGluLR_plant 305 820 IPR017103 -
Amo01g0977 829 PIRSF IGluLR_plant 2 311 IPR017103 -
Amo01g0977 829 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 311 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0977 Amo-Chr1 12879692 12886803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0977 3 829 Ion Channels AT1G42540 51.435 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0977 K05387 - gmx:100790502 1228.39