Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0974 ATGAGCAAAGATTGGGTTGTTATTGTGTTTGTGATATTTGTTTCAAGTAGTGGAATATTATTCAGCAATAATGTTTGTGCAAAACCACCTCCTAATGTTAACATAGGAGCAATTTTAGCTCTCAACTCAACCATTGGAAAGGTGGCAAAAATTGCTATAGAAGCAGCAGTGAATGATGTAAATTCAGATTCAACCATTCTCAGTGGAACCAAGCTTAACATCTCTATGCAAGACACAAAACTATCAACTGGATTTCTAGGAATCATTGACTCATTGCTATTGATGGAGAAAGACACTGCAGCCATAATTGGTCCACAATACTCAGTAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTATTGATCAATTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGTGTTGCTGCATTAGGTGATAAGCTTGCCGAAAAACGTTGCAAGATATCACACAAAGCAGCCCTTAAACCTGATGATAGCAATGTCAACAAGGAAGAAATCAACAGTGCATTAGTTAAAATTGCTTTAATGGAGTCTAGGGTTATAGTTCTTCACATTTACCCTTCTTTTGGCCTTGAAGTTCTTCACATTGCACAATCATTAGGCATGATGGGAAGTGGTTATGTGTGGATAGTCACTGATTGGCTCACAACTGCTCTTGATTCTGATCCATCATTGGCTACAACTTCAATCATGAATGATATGCAGGGTGTTATCACCTTGAGAATGCACACACCAGATTCAAGAATCAAGAGCAATTTTGAGTCTAGGTGGCCCAAACTAGCTCATCAAAATAATGATGAGGGTCCTTTTGGATTGAACATCTTTGGTTTATATGCTTATGACACTGTTTGGACCTTAGCTTATGCACTTGATGCATTCTTTAGAAGTGGTGGAACTTTGAAATTTTCAAATGATTCAAGTCTAAACACTTTAAGGGGTGATGGTGATACCCTGCATCTTGATACTATGGGAATGTTTCTTAATGGTAGCATGTTGCTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGTCCGATGATGTTTTCTCAAGATGGAAACCTAATGAATCCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTCTGGTCTTCACACTGGTGAACAAGTTCCAAACCATGGAAATTCAAGTGAATTAGGGCTTTATGGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCCAACAATGGAAAACAATTGAGAATTGGGGTGCCACTTAGGGTTAGCTACCATGAATTTGTGTCAAGAACTGAAGGCACTGATAAGTTTAGTGGTTATTGTATTGATGTGTTCACAGCTGCATTGGAATTGTTGCCTTATCCAGTCCCAAATAAGTTTATTCCATTTGGTGATGGTAAAACCAATCCATTGAATTCACTACTTCTTCAGAGGGTCACACTTGGTGAGTTTGATGCTGTGGTGGGCGACATTACCATTACCACAAACAGAACTAAGATTGTGGATTTCACACAACCATACATTGAATCCGGTTTAGTTGTTGTGGCACCAATAAGGAAGATGAAATCTAATGCTTGGGCCTTTCTAAGACCATTTACTCCAATGATGTGGCTTGTCACAGGAATGTTTTTCTTGGCTGTTGGGGCTGTTGTTTGGATTTTAGAACGTCGCTTGAATGATGATTTTAGAGGCACTCCTAGGAGACAATTTGTCACCATTATATGGTTTAGCTTCTCAACCTTGTTCTTTGCACATAGAGAGAAAACTGTTAGCACACTTGGGCGATTAGTCTTAATCATATGGCTGTTTGTGGTTTTAATACTGAATTCAAGCTACATTGCAAGCCTAACATCAATCCTCACAGTGGAACAACTCTCTTCCCCAATTAAGGGGATTGAAAGCTTAGCAACAAGCAATGAAAGAATTGGTTACTTGAGAGGATCATTTGCTGAGAATTATCTAACAGATGAACTCAACATACATAGGTCAAGGCTTGTTCCTCTCAATGACCCTTCAGAATATGAGAAGGCATTGAAGGATGGAGCTGCTAATGGTGGTGTTGCTGCAATCATAGATGAACGTGCATACATGGAGTTGTTCCTAGCAACTAGGTGTGAATTTGGGATTGTTGGTCAAGAGTTTACCAAGATGGGATGGGGCTTTGCCTTTCCAAGAGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTATCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGCTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAGCAAGGCATAGATAGGCTTGAGACTAAGAGCTTTTGGGGTCTCTTCCTTCTTATTGGCATTGCATGCTTCATTGCTCTCCTTTGCCATGTTATTAGAATGACCTACCGTTTTAATAGGCATTATTCAAACAACACTACTAGTAATGACAACCTTGGAGGCTCTTCTTCTTCTTCTTCTTGTTCTTCTCAGAAGAGGAAGAGAGAGATGGAAGATAAAAATGGGAAAAAGAGAAGGCGCAAAGATAATAGAGTGGTTCATGAAGTAGAGGTTTCACCATTGCATGAATCAAACGTTAGCATCCATGTTGAAAATGGTGCCTAA 2796 0.3934 MSKDWVVIVFVIFVSSSGILFSNNVCAKPPPNVNIGAILALNSTIGKVAKIAIEAAVNDVNSDSTILSGTKLNISMQDTKLSTGFLGIIDSLLLMEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIIDQFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRCKISHKAALKPDDSNVNKEEINSALVKIALMESRVIVLHIYPSFGLEVLHIAQSLGMMGSGYVWIVTDWLTTALDSDPSLATTSIMNDMQGVITLRMHTPDSRIKSNFESRWPKLAHQNNDEGPFGLNIFGLYAYDTVWTLAYALDAFFRSGGTLKFSNDSSLNTLRGDGDTLHLDTMGMFLNGSMLLQKILEVNRTGLTGPMMFSQDGNLMNPSYEIINVIGTGVRRIGFWSNSSGLHTGEQVPNHGNSSELGLYGVIWPGQTTQTPRGWVFANNGKQLRIGVPLRVSYHEFVSRTEGTDKFSGYCIDVFTAALELLPYPVPNKFIPFGDGKTNPLNSLLLQRVTLGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSNAWAFLRPFTPMMWLVTGMFFLAVGAVVWILERRLNDDFRGTPRRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLATSNERIGYLRGSFAENYLTDELNIHRSRLVPLNDPSEYEKALKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCHVIRMTYRFNRHYSNNTTSNDNLGGSSSSSSCSSQKRKREMEDKNGKKRRRKDNRVVHEVEVSPLHESNVSIHVENGA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0974 931 SUPERFAMILY Periplasmic binding protein-like II 449 816 - -
Amo01g0974 931 MobiDBLite consensus disorder prediction 871 931 - -
Amo01g0974 931 SMART GluR_14 475 816 IPR001320 GO:0015276|GO:0016020
Amo01g0974 931 MobiDBLite consensus disorder prediction 871 887 - -
Amo01g0974 931 SUPERFAMILY Periplasmic binding protein-like I 27 465 IPR028082 -
Amo01g0974 931 CDD GluR_Plant 472 814 - -
Amo01g0974 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Amo01g0974 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Amo01g0974 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Amo01g0974 931 Gene3D - 730 821 - -
Amo01g0974 931 Gene3D - 464 583 - -
Amo01g0974 931 MobiDBLite consensus disorder prediction 888 915 - -
Amo01g0974 931 PIRSF IGluLR_plant 2 929 IPR017103 -
Amo01g0974 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 875 - -
Amo01g0974 931 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Amo01g0974 931 Pfam Receptor family ligand binding region 51 417 IPR001828 -
Amo01g0974 931 Gene3D - 51 407 - -
Amo01g0974 931 Pfam Bacterial extracellular solute-binding proteins, family 3 484 815 IPR001638 -
Amo01g0974 931 CDD PBP1_GABAb_receptor_plant 34 432 IPR044440 -
Amo01g0974 931 Gene3D - 149 432 - -
Amo01g0974 931 Gene3D - 584 719 - -
Amo01g0974 931 PANTHER GLUTAMATE RECEPTOR 25 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0974 Amo-Chr1 12850362 12857534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0974 27 906 Ion Channels AT1G42540 58.277 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0974 K05387 - gmx:100790502 1430.23