Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0970 ATGGCCAGAAAAGTTCATAACCATAAGAGACATCATGAAGGTATGAATAATTCACAACATAGCATGAAGCTGCAAGAAGAAGCATCAAAGATTATGTACAAACCAGAAGTTAAATTACCTCACTCTACTAAAGGATCAAAGAACAATGGTTATTCAAATGTGAACTCAGTGAGAGAATTGATGAATGAGGAGTTATCTACACAATCATGCAACCGAAATAATGTACCAAGCATCGTGGCGAGGTTGATGGGACTAGATATGATGCCATTAGGCTCTAGATCTGTTGTTCTTCTATCAGATCAGTGCATAACTGATCAAAATATGGAGAATAAGATCTTTGATGATGATGGAATGGGAAAAAAGTTCACAAATCCAATGCTGCTGGAAGAAGAACTCAAGAAATTCAAGAGAGAATTTGAAGCATATCAAGCATTAAGGCTTAAGGAGTGTCCAAAAGTTGATGAAAGAATTCGAAGCGTTTCGCAAAGAACCAAGAGTGTTCAAGAATTGGTTCCATGTAATACAAATTCAAAGACAAAGAGAAAGGGAAAGGGAAAGGTAGCAATGAACAAATCTAGAAGAAGATTTGATGATACATCACTTTCACCAACTCAGATAACTATCTTGAAGCCTTGTTGCTACCATGAAGAGAGTTTGATCAATTCATCAGAAACTTCACAAGGGAGAACAAGTACTGGTTTAAAAGATTTTCTTGAGGAAGGGAAAAGTACTTTGGAAAAGTGTTCTTCATCGGTTCGAGGAAGCGAAAATGAGAGACATAACACTAAAAAACAATCCAATTCTAAAGAAGTGGTTTGTCATAGATCAAGCGAGTTCACAGATTTTGTGACTAGGGATGTTGTTGAAGCAAATTTACTCCATTCACAATCAACAAGATCTTTTCGAAGTGAAATCGAGTTCAATGGACAGAGTTCCCCTGAATTTATCAGCAGAGGAACAATGAAGTATGCAAATTTGAATGATGATTCATTGCTTCAGAAGGAGTTATCTCCAATGAACCTTGTAAGATCCTTGTCAGCTCCTCTATCAGGAAGATTTAGCCGCTTTTCGAACGGTGATCAAATTCGGAAGAAGCTTGAAGATCTTGAAAGGATGTCTTTTGATGCTAAGAAGAAGAAGAAAGATAGATTTGGAATTAGAGAAAAAGTTTCTTATCTTAAACAAAAGTTTGGTCTAAGAGGCAAGATTTTTGCCAAAAGGATTCATTCAATGGTTGAAACTCCTAATAGCATTGAAGATGGTTTCATGGTGAGAGACATTAGAAGTGGACCAACTGTTCTCATGAAACATGGGAGAAACCATGATAACTTCACCGAGGTTCCTCCTAGTCCTGCATCTATGTGTAGCAGTGTTCATGAAGAACTTTGGAGGCAGAATGCAATTTTAAGTCCAATTTCAACTCCAAGTGTATCTTCAGTAGATGATAGCATTATGCCACAGGTTTATGGAGATATCAGCTCTGATTTAAATGAACTAAGTAAGCAACTTAGCCAACTTGAGTTTGACAGCTCAGAGGAATTCGCAACAAAGCGAAAATCTGCCGAGTACAAATTAGAACGGCTACTCGATCCGGCGGAGACTTATATAAGAGATCTTCTTGTTGCTTCTGGACTTTACTTTGGATCATGGGACAAATACCTTCAAAGAGAGGACACATTTACAAAGCCTATAGCCAACTCAATTTTTGAAGAAGTGGAAGAATCTCACAAGAAATGTTTGGTTAAAGAGAATATTATTGATAACAAGTTAGATCACAAAATGTTACTTGATTTGTTAAACGAGGCACTTTCCATTGTTCTTGGACAACCTTTGACAATGTCTAAATTCAGAAGGAAACTCAATAATTCATGCATAATACAAACTCCACCATGTGGGAAGGAACTATTGAAGCTAGTATGGGACATTATCCATGTTTCGTTGTATCCTCCAATGTCTAACACATGTTCTTATTCATTTGATAGTTTGAAGGCACAAGATTTTGGATCCATGTCATTGTATGGACTAATGAATGATGAGATCAATAATGTCTTAGAAATGGAGATGGCATGTTCAATTAGTGATGATTTGGTTGAAGAACTCATAAAGGATATGATGGGATTTTAA 2124 0.3663 MARKVHNHKRHHEGMNNSQHSMKLQEEASKIMYKPEVKLPHSTKGSKNNGYSNVNSVRELMNEELSTQSCNRNNVPSIVARLMGLDMMPLGSRSVVLLSDQCITDQNMENKIFDDDGMGKKFTNPMLLEEELKKFKREFEAYQALRLKECPKVDERIRSVSQRTKSVQELVPCNTNSKTKRKGKGKVAMNKSRRRFDDTSLSPTQITILKPCCYHEESLINSSETSQGRTSTGLKDFLEEGKSTLEKCSSSVRGSENERHNTKKQSNSKEVVCHRSSEFTDFVTRDVVEANLLHSQSTRSFRSEIEFNGQSSPEFISRGTMKYANLNDDSLLQKELSPMNLVRSLSAPLSGRFSRFSNGDQIRKKLEDLERMSFDAKKKKKDRFGIREKVSYLKQKFGLRGKIFAKRIHSMVETPNSIEDGFMVRDIRSGPTVLMKHGRNHDNFTEVPPSPASMCSSVHEELWRQNAILSPISTPSVSSVDDSIMPQVYGDISSDLNELSKQLSQLEFDSSEEFATKRKSAEYKLERLLDPAETYIRDLLVASGLYFGSWDKYLQREDTFTKPIANSIFEEVEESHKKCLVKENIIDNKLDHKMLLDLLNEALSIVLGQPLTMSKFRRKLNNSCIIQTPPCGKELLKLVWDIIHVSLYPPMSNTCSYSFDSLKAQDFGSMSLYGLMNDEINNVLEMEMACSISDDLVEELIKDMMGF* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0970 707 MobiDBLite consensus disorder prediction 175 200 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 326 704 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 112 - -
Amo01g0970 707 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g0970 707 MobiDBLite consensus disorder prediction 248 269 - -
Amo01g0970 707 Pfam Domain of unknown function (DUF4378) 534 699 IPR025486 -
Amo01g0970 707 Pfam DUF761-associated sequence motif 76 89 IPR032795 -
Amo01g0970 707 MobiDBLite consensus disorder prediction 252 269 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 129 164 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 112 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 129 164 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 167 323 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 167 323 - -
Amo01g0970 707 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 326 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0970 Amo-Chr1 12824445 12827819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0970 63 704 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 34.578 1.44e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0970 - - aip:107621743 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0278 05 3542319 3547275 Amo01g0970 01 12824445 12827819 PCT
Amo01g0970 01 12824445 12827819 Amo05g0278 05 3542319 3547275 PCT