Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0967 ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACGGGAAGGAAGCAGGCTAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAACAACAAATCCGTTGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAGGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGATGATGATGATGAGGATGATGATGATGATGAGTGA 420 0.4643 MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKKQESKGASEEDESDKSKSEVNDDDDDEDDDDDE* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0967 139 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Amo01g0967 139 CDD HMGB-UBF_HMG-box 36 87 - -
Amo01g0967 139 MobiDBLite consensus disorder prediction 122 139 - -
Amo01g0967 139 MobiDBLite consensus disorder prediction 55 139 - -
Amo01g0967 139 MobiDBLite consensus disorder prediction 1 42 - -
Amo01g0967 139 Gene3D High mobility group box domain 20 123 IPR036910 -
Amo01g0967 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Amo01g0967 139 SMART hmgende2 35 106 IPR009071 -
Amo01g0967 139 SUPERFAMILY HMG-box 22 106 IPR036910 -
Amo01g0967 139 MobiDBLite consensus disorder prediction 1 36 - -
Amo01g0967 139 MobiDBLite consensus disorder prediction 75 121 - -
Amo01g0967 139 Coils Coil 87 110 - -
Amo01g0967 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 137 - -
Amo01g0967 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 137 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0967 Amo-Chr1 12780677 12782541 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo01g0967 HMG_box 1.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0967 K25507 K22507 ahf:112797235 202.601