Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0963 ATGGGTCAATGCTTTGGCTCTCTCTCTTCTGCTCAAAACCCTTCATCCTCTACCCTCTCCAAGGCTCAGTATTCAGGTTCAGCTAGCACTGACAGCAGGAATGTGGGGTTCTCGGCGACCACCGCTAGCAGCGCCGGGAAGAGCCAGTTCTCGGAGATTGCAAGCGGCAGCATCATCGATGACGGGACTAGTTCGCTTCCATCTTCAAGTGGCCAGATCCTGGAGAGGCCTAATTTGAAAGTGTTCAGTTTCGGGGACCTGAAATCGGCGACAAAGAGCTTCAAATCAGATACATTGCTCGGTGAAGGCGGGTTTGGCAGAGTGTATAAAGGGTGGTTGGATGAGAAGACACTCACACCAGCAAAGGCAGGGTCAGGGATGGTGGTTGCTATCAAGAAATTGAACTCTGAAAGCACTCAAGGGTTTCAAGAGTGGCAGTCAGAAGTAAACTTCTTAGGAAGGCTTTCTCACCCGAACCTGGTAAAGCTATTAGGGTACTGTTGGGACGACGACGAGCTTCTACTTGTGTATGAGTTCATGCCAAAGGGGAGCTTGGAGAATCATCTTTTCAGAAGGAATCCTAACATAGAACCACTTTCATGGAACACCCGAATTAAGATAGCTATTGGCGCAGCAAGGGGCCTCGCTTTCTTGCACGCTTCCGAAAAACAAGTCATATACAGAGATTTCAAGGCTTCAAATATACTACTTGACGGGAATTACAACGCGAAAATATCGGATTTCGGCTTGGCTAAATTGGGCCCTGCTGTGGGAGCATCACATGTAACTACCAGAGTCATGGGCACATATGGCTATGCTGCTCCGGAGTACATTGCAACAGGTCACTTGTATGTGAAGAGTGATGTCTACGGCTTTGGCGTAGTTCTACTTGAAATGATGTCAGGCTTGCGCGCGCTCGATACAAAGCGGCCGACAGGGCAACAGAATCTGGTTGAATGGGTTAAGCCTAATCTCTCCAACAAGAGAAAGTTGAAAACCATAATGGATGCTAGGATTGATGGCCAATATTCACAAAAGGCGGCGCAGCAGGCGGCACAACTCACTCTGAAATGCTTGGAACCGGACCCCAAAAACCGACCGTCGATGAAAGAAGTTGTGGAGGCATTGGAAGCCATAGAATCAATGCAAGATAAATCCAAGGAGTCCAAGAATAGAGGTTCTCATTCTTCTGCTGCCTCTAAGAGTCACCATCATTCAAGGCAAAGAGTTTCAAAAGCAAAAGTATGA 1248 0.4784 MGQCFGSLSSAQNPSSSTLSKAQYSGSASTDSRNVGFSATTASSAGKSQFSEIASGSIIDDGTSSLPSSSGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLTPAKAGSGMVVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPAVGASHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMMSGLRALDTKRPTGQQNLVEWVKPNLSNKRKLKTIMDARIDGQYSQKAAQQAAQLTLKCLEPDPKNRPSMKEVVEALEAIESMQDKSKESKNRGSHSSAASKSHHHSRQRVSKAKV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0963 415 Pfam Protein tyrosine and serine/threonine kinase 97 376 IPR001245 GO:0004672|GO:0006468
Amo01g0963 415 SUPERFAMILY Protein kinase-like (PK-like) 68 377 IPR011009 -
Amo01g0963 415 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Amo01g0963 415 Gene3D Phosphorylase Kinase; domain 1 78 179 - -
Amo01g0963 415 MobiDBLite consensus disorder prediction 1 35 - -
Amo01g0963 415 MobiDBLite consensus disorder prediction 378 415 - -
Amo01g0963 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Amo01g0963 415 MobiDBLite consensus disorder prediction 397 415 - -
Amo01g0963 415 CDD STKc_IRAK 100 379 - -
Amo01g0963 415 ProSiteProfiles Protein kinase domain profile. 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0963 415 Coils Coil 372 392 - -
Amo01g0963 415 MobiDBLite consensus disorder prediction 378 394 - -
Amo01g0963 415 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 51 391 - -
Amo01g0963 415 PANTHER OS01G0588500 PROTEIN-RELATED 51 391 - -
Amo01g0963 415 Gene3D Transferase(Phosphotransferase) domain 1 180 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0963 Amo-Chr1 12758500 12763043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0963 80 386 Glycoside Hydrolase AT3G07070 51.299 2.52e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo01g0963 PK_Tyr_Ser-Thr 8.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0963 - - gmx:100794193 648.277