Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0959 ATGGGAGGTGACAGTGCCGCAGAGAGGTCTACGGATTCAAAGGTCTCTGAACCCGTCAGCATCAACATTCGGTGTTCCAATGGTTCCAAGTTCTCGGTTCAGATTTGCCTCGATTCCACCGTCGGATCCTTCAAGGAAGTCATTGCTGGCAGCTGCGATATCCCAGCCGGTCAGCAGCGCCTGATTTACAAGGGTCGGATCCTGAAGGATGATCAGACCCTACAAAGCTATGGCTTGGAGGCAGATCACACCATCCATTTGGTTCGTGGCTTCACACCTTCCAATACAGGTGGGGGCACAAATACCAGTGGCACCAATACCGCCACGACTAATGCCAGAAGTACTGGTGCTGCTGAGGGTGGGGGCTTAGGAGGCCTTGGTTTTGGAGCTTCATTGTTCCCTGGATTAGGTTTGAATGGGATGGGTGGCAATAACCTATTTGGAGAGGGATTTCCGGATCTTGAGCAGATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATTATGAACACACCTGCTATGCAGAACCTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGCAACCCGCAGATGCAGGAGCTCATGGATCGGAATCCTGAGTTAGCTCACATACTTAATGATCCAAGCACCCTCCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATTATGCGTGAAATGATGAGAAATACCGACAGAGCAATGAGCAACATTGAAGCATCTCCTGAGGGATTTAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACGATGGCTGGAAACACAGGAGGCAACAATACACCACTTTCTGGGACTCAAGCCAGGGACCAATCAACAAATCCCTCAACTACTAGCTCCGAAGCAACTGCTGGTTCTCCATTACCCAATACTAACCCACTCCCCAATCCTTGGTCCTCTACGGGAACTGGTGGTGCCCAAAATAACAATAGAAGGTCAACCCCTGCTGGTGGGGATGCTAGGCCGCAGGCACCTACTGGCTTAGGAGGGCTTGGACTGCCGGATCTTCAAGGCATGCTGGGCGGCAATGCTATGCCAGATCCTGCTTTAATGGCCCAGTTAATGCAAAATCCAGCTATCTCAAATATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATGCTTGGAGCTAATGCTGATCAGCGTGGCATGCCTGATTTGAATTCTCTTAGAGAAGTGATGCAAAATCCAGAGTTCCTTCGCTTATTTTCTTCACCTGAGACACTGCAGCAACTCATGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAACAACAGCCACGGGAATCAGGTCAAACTGGCGGAGGCACTGGTCCTTTGAACAACTTGGCAGGTTTGGAGTTGTTATCAAGCATGTTCGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCGCCCGAGCAGTTGTATGCAACCCAGCTTTCTCAGCTTCAAGAAATGGGATTCTTCGACACGCAAGAGAACATAAGGGCCCTTATTGCCACATCCGGTAATGTTCATGCAGCAGTTGAACGACTTCTAGGAAACCCTGGTCAGTAG 1623 0.4812 MGGDSAAERSTDSKVSEPVSINIRCSNGSKFSVQICLDSTVGSFKEVIAGSCDIPAGQQRLIYKGRILKDDQTLQSYGLEADHTIHLVRGFTPSNTGGGTNTSGTNTATTNARSTGAAEGGGLGGLGFGASLFPGLGLNGMGGNNLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMAGNTGGNNTPLSGTQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNNRRSTPAGGDARPQAPTGLGGLGLPDLQGMLGGNAMPDPALMAQLMQNPAISNMMQSMLSNPQTLNQMLGANADQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQPRESGQTGGGTGPLNNLAGLELLSSMFGGLGTGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0959 540 Gene3D - 189 247 - -
Amo01g0959 540 CDD UBA_PLICs 498 536 - -
Amo01g0959 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Amo01g0959 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Amo01g0959 540 MobiDBLite consensus disorder prediction 443 462 - -
Amo01g0959 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Amo01g0959 540 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Amo01g0959 540 SMART CBM 399 434 IPR006636 -
Amo01g0959 540 SMART CBM 343 396 IPR006636 -
Amo01g0959 540 SMART CBM 144 181 IPR006636 -
Amo01g0959 540 SMART CBM 194 233 IPR006636 -
Amo01g0959 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 540 - -
Amo01g0959 540 CDD Ubl_Dsk2p_like 19 91 - -
Amo01g0959 540 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Amo01g0959 540 Gene3D - 480 540 - -
Amo01g0959 540 MobiDBLite consensus disorder prediction 443 464 - -
Amo01g0959 540 MobiDBLite consensus disorder prediction 269 335 - -
Amo01g0959 540 PANTHER UBIQUILIN 3 540 - -
Amo01g0959 540 SMART uba_6 498 536 IPR015940 -
Amo01g0959 540 SMART ubq_7 19 90 IPR000626 GO:0005515
Amo01g0959 540 SUPERFAMILY Ubiquitin-like 13 105 IPR029071 -
Amo01g0959 540 MobiDBLite consensus disorder prediction 269 352 - -
Amo01g0959 540 Gene3D - 6 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0959 Amo-Chr1 12729908 12734351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0959 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.40e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0959 K04523 - gmx:100776447 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0299 05 3711133 3715604 Amo01g0959 01 12729908 12734351 PCT
Amo01g0959 01 12729908 12734351 Amo05g0299 05 3711133 3715604 PCT