Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0953 ATGCTCCACCTGCTTGTCTACCACATTGTTCTGCCTTGCCACCAAGCAACAACAATAATAAGGCCTCCCCAGTTCCGCAATTCATCAACTCATCAATTCATCATCAACAGTTCAACACTCATCAGCCAGCCACCACCAGCAGCTCCTACCATCGCCGAACTCCTCTCCTCGGCCAGAGCTCACCGACGCCGTCGGAATTTGACTGACAGAGGGTGCCGTCTCCGAACGTCTCTGCCACTCACCCTCTTCTCCTCGCCGTGGAATCTCTGCTCGGAGCTCTTCTCGTTGCCGTCGCGAACTGCTCCTGCTCGGCTGTCGTCTCCTCACCGTAACGAGCTCTGTTCCCGGCGTCTCTCTCTTCAAGCTCTCTCGCTATCTCTACGAGGTCACTGTCAGCGCCGTGTTCCTCCGAGCTCACTCTGTCACCGCCGTTCCTCCCTTGGCGTCTCACCGCACTTCGTGACGTCACTCTACAGCTCTGCTCTTGACCCGTCGCTGCTTCATTTGTGGCCTCCCCATATTCACACAGCCTCCTTTCTCTTGCCTGAGCTTCACCGGCCTCGTCGTTTTCTTCTGCTGTCGAGCAATGCATATAGACGTACACCTACCTTTCACTTTCGATTAGAAAGGAGAAGAAAACCAGGACCAAGACGAGGCAGCAGCATTTGTTGTTGTTGTGGTTCTGCCTCTGAGTGGGAACTTAAGGAAGCAGGTATAGCCGTGTCAACTTTCCTTCAAGGATTAGGGGTGTCAGAGGAGGAGTCCGTATCCATCGCATCCAAGTCACCCTCTTACTCCAACATGTTGGTGGAGAGTGTCAGGGATTTGGACCAACACTCCATGTGGAATTCCGATTCGGCCTCCTTGGGCTTCAGGGAAAAGCTTCTTCACATTGCCTCCGTCAAAGGTGACAATGGAAAACTCCCTTACTTTGAGAGTCTCGGCTTCACTCACTCTTCATCTATCACTCTTGCTAGGTATCTCTCCTCTCAGAACCTCCCATCCCTCATGCACAAGGTTGCATCCATCAAGGACCTCTTCTTTTCTCATCAAGCTGATCACCTCCTCATCAACAACATTCGTCGCATGATGCTCCACCTGTCCATTCCAATCGACGATGATCTACAACATATTCTCTCCTTCTTTGAGAAGCTTGAAGCCAGGCGTGGAGGCTTAAATGTCTTGCTCTCTGACAAAGACACTGCCTTTCGCCATTTGATTGATTCCTTTCCTCGTTTACTTTCACTCTCACTGGATAACCACATCGTTCCTATTATCGATTTTCTCCACAATATTGGAGTTCCCAGAGTTCACATCACAACCATAATACTCTCTTTTCCGCCTATTCTGTTCTGGAATATTCAACTCCTTAAAGCTAGACTCCTCGCCTTGAAACAGATTCATGTGGTGGATAAAGATTATATCAAGTTGTTGATCAGATATCCTTGGGTTCTATCTACAAGCATTCAAGAGAACTATGAGGAGGTTCATGGATTTTTTCTTTCTGAGAAGGTTAGAAAGATATGTATTGACTCTGCAATCAGAGGCCAACCATACCTGTTGGGTTGTTCAACAAGCAAGCTGAAGTCGATGCTGGATCAGTTGGCTGATCTTGGAGTTAAGGGAAATAAGTTAGATAGAGTTATTGCTAGAAGCCCGCAGCTACTATTGCGGAAGCCCAGAGATTTTCTACAGGTTGTTCTGTTCTTTGAAAATATGGGCTTGGATAGAGAAATTGTTGGGAGAATTCTTTCTCGCTGCCCAGAAATTTTCGCTGCCAGCATCAATAAAACTCTTAAGAGGAAGATTGAATTCCTTTCTGGGGTTGGCGTTTCGGAAGCATATCTTCCTGGGGTAATCAGAAAGTATCCGGAATTACTTCTAACGGACACTGATAAAACCATACTGCATCGGCTGATGTACCTGATGAAGTTAGGACTTTCGGAGAAAGAGATTGGGTTTATGGTGCGCACGTTTTCTCCGCTCCTCGGGTACAGTATAGAGGAGGTTTTGAGGCCAAAAATAGAATTCTTGGTGAAGTCGATGGGGAGGCCGGTACGAGAAGTTGTCGATTACCCTCGGTATTTTAGCTATTCATTAGAAAAAAAGATAAAGCCAAGATACTTTGTACTCAAGGGAAGGCACATTGAATGTAGTTTAAAGGATATGCTGGGAAAAAATGATGAGGAATTTGCTGCAGAATTTATGGGTGTGGGTCTTGGAGGGATGCTTGACCCTCCTCTCTGTTCTGAGAATGGATTGTTGAGTATTACAAAGGATAAGAAGGTAGAGCTTCTTACCGATGAGGTTGATGGATTGAAATTCAAATTAACGGATGGTGTTGATATAGCAAAAGATGGTACCATTTATTTCACAGATGCTTCATACAAGTACTCATTAAAGGACCGCTTCTTAGACTTGTTGGAGGGTAAGCCTCATGGTAGATTCATGAGTTATGATCCAACAACAAAGAAAACAGAAGTGCTTGTCCATAATCTCTACTTCCCCAATGGTGTTGCTGTCTCACCAGATCAGCAATTTGTCATCTTTGAAAGTGTTCAGATGAAGTGCAAGAAATATTACATAGAAGGCCCTAAGAAAGGAAGTGTTGAAAAATTTTGTGATAACCTACCTGGCTACCCTGATAACATTCATTATGATGAACAAGGGATCAACCCCAGAACTGGATATAATATTCAGATACCCTTTGATTCGGAAGGCTTTAGGAATGTTTGCAAAGTATGTAACAAAAATGAAGGAGTTATATCTGTAGATTTGGATGGAAAACCCATTGGTCACTATTCTGATCCCAAATTAGCACTAGCAAGTGGAATTAAAATTGCTTCTGCAACTCGCTCTGAGCTTCAGACAACAACAAGCTCAACGCAATGGCTTTTCATAGTATCCTTTTTCCTCCTTCTTCCGGTGGTTCTAGCTGCGCTTCTTTTCCGCCTCGAACCGTTCGATCCGGTTCATTTCCCGCCCCATGAGATAACCCGGCTCAACTTGGCCAGCACGGTTGCCCGCAACGATAACATGCGACGAGGCTCGGAGGTTGTCGGAAACGGACGCGTGGCGGGGCCGGAAGACCTGGTTTATGATGCGGAGGCGCACGTGGTTTACACGAGTTGTGAAGATGGTTGGATCAAGCGAGTGAGTTTAAGTAATGACTCGGTGGAAGATTGGGGATTGGTGAGGGTGAGAATGGATAAGAAGGTAGAGGTTGTAACAGATGAAGTTGATGGATTGAAATTCAAATTAACGGATGGTGTTGATGTGGCAAAAGATGGAATTATTTACTTCACAGATGCTACTTACAAATACTCTTTAGAGGACCACTTCTTAGACTTGTTGGAGGGTAAGCCTCATGGTAGATTCATGAGTTATGATCCAACAACAAACCAAACAAAAGTGATTGCTCATAATCTCTACTTTCCCAATGGTGTTGCTGTCTCACCAGATCAACAATTTGTCATCTTCTGTGAAAGTTTTCTGATGAAGTGCAAGAAATATTACATACAAGGCCCTAAGAAAGGTACCATTGACAAGTTTTGTGACCTACCTGGTGCTCCTGATAATATTCATTATGATGGACAAGGAAACTATTGGATTGGAATAGCCACGGAATATACAGCTGAAGCGGAATTAGCATACAAATACCCTTTCATTCGGAAGGCTATAATGATGTTTTCAAAGTATATAATGAATCCAAGTTTTGCCAAGAATGGAGGAGTTATAGCTGTTGACTTGGAAGGAAACCCAATTGCTCACTATTATGATCCCAAATTATCATTAACTAGTGGAATTAAAATTGAGTTGAAGATAGCAACAAATTAA 3837 0.4446 MLHLLVYHIVLPCHQATTIIRPPQFRNSSTHQFIINSSTLISQPPPAAPTIAELLSSARAHRRRRNLTDRGCRLRTSLPLTLFSSPWNLCSELFSLPSRTAPARLSSPHRNELCSRRLSLQALSLSLRGHCQRRVPPSSLCHRRSSLGVSPHFVTSLYSSALDPSLLHLWPPHIHTASFLLPELHRPRRFLLLSSNAYRRTPTFHFRLERRRKPGPRRGSSICCCCGSASEWELKEAGIAVSTFLQGLGVSEEESVSIASKSPSYSNMLVESVRDLDQHSMWNSDSASLGFREKLLHIASVKGDNGKLPYFESLGFTHSSSITLARYLSSQNLPSLMHKVASIKDLFFSHQADHLLINNIRRMMLHLSIPIDDDLQHILSFFEKLEARRGGLNVLLSDKDTAFRHLIDSFPRLLSLSLDNHIVPIIDFLHNIGVPRVHITTIILSFPPILFWNIQLLKARLLALKQIHVVDKDYIKLLIRYPWVLSTSIQENYEEVHGFFLSEKVRKICIDSAIRGQPYLLGCSTSKLKSMLDQLADLGVKGNKLDRVIARSPQLLLRKPRDFLQVVLFFENMGLDREIVGRILSRCPEIFAASINKTLKRKIEFLSGVGVSEAYLPGVIRKYPELLLTDTDKTILHRLMYLMKLGLSEKEIGFMVRTFSPLLGYSIEEVLRPKIEFLVKSMGRPVREVVDYPRYFSYSLEKKIKPRYFVLKGRHIECSLKDMLGKNDEEFAAEFMGVGLGGMLDPPLCSENGLLSITKDKKVELLTDEVDGLKFKLTDGVDIAKDGTIYFTDASYKYSLKDRFLDLLEGKPHGRFMSYDPTTKKTEVLVHNLYFPNGVAVSPDQQFVIFESVQMKCKKYYIEGPKKGSVEKFCDNLPGYPDNIHYDEQGINPRTGYNIQIPFDSEGFRNVCKVCNKNEGVISVDLDGKPIGHYSDPKLALASGIKIASATRSELQTTTSSTQWLFIVSFFLLLPVVLAALLFRLEPFDPVHFPPHEITRLNLASTVARNDNMRRGSEVVGNGRVAGPEDLVYDAEAHVVYTSCEDGWIKRVSLSNDSVEDWGLVRVRMDKKVEVVTDEVDGLKFKLTDGVDVAKDGIIYFTDATYKYSLEDHFLDLLEGKPHGRFMSYDPTTNQTKVIAHNLYFPNGVAVSPDQQFVIFCESFLMKCKKYYIQGPKKGTIDKFCDLPGAPDNIHYDGQGNYWIGIATEYTAEAELAYKYPFIRKAIMMFSKYIMNPSFAKNGGVIAVDLEGNPIAHYYDPKLSLTSGIKIELKIATN* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0953 1278 SMART mt_12 546 576 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 581 612 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 686 717 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 617 648 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 511 541 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 404 435 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 653 685 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 SMART mt_12 475 506 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 Pfam mTERF 426 732 IPR003690 GO:0003690|GO:0006355
Amo01g0953 1278 PANTHER STRICTOSIDINE SYNTHASE-RELATED 970 1271 - -
Amo01g0953 1278 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 4-RELATED 751 945 - -
Amo01g0953 1278 SUPERFAMILY Calcium-dependent phosphotriesterase 1016 1263 - -
Amo01g0953 1278 Gene3D Transcription termination factor 3, mitochondrial 510 740 IPR038538 -
Amo01g0953 1278 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 4-RELATED 970 1271 - -
Amo01g0953 1278 Pfam Strictosidine synthase 1089 1176 IPR018119 GO:0009058|GO:0016844
Amo01g0953 1278 Pfam Strictosidine synthase 779 864 IPR018119 GO:0009058|GO:0016844
Amo01g0953 1278 Gene3D - 1060 1232 IPR011042 -
Amo01g0953 1278 Gene3D - 750 923 IPR011042 -
Amo01g0953 1278 Pfam Strictosidine synthase-like, N-terminal 1016 1052 - -
Amo01g0953 1278 SUPERFAMILY Calcium-dependent phosphotriesterase 751 967 - -
Amo01g0953 1278 PANTHER STRICTOSIDINE SYNTHASE-RELATED 751 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0953 Amo-Chr1 12636142 12656681 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g0953 mTERF 2e-89 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0953 K15032 - gmx:100802127 680.633