Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0943 ATGGCCAGAAAAGTTCATAACCATAAGAGACATAGTGAAGGTATGAATAATTCACAACAWAGCATGAAGCTGCAAGAAGAAGCATCAAAGATTATGTACAATCCAGAAGTTAAATTACCTCACTCTACTAAAGGATCAAAGAACAATGGTTATTCAAATGTGAAYTCAGTGAGAGAATTGATGAATGAGGAGTTATCTACACAATCATGCAACCGAAATAATGTACCAAGCATCGTGGCGAGGTTGATGGGACTAGATATGATGCCATTAGGCTCTAGATCTGTTGTTCTTCTATCAGATCAGTGCATAACTGATCAAAATATGGAGAATAAGATCTTTGATGATGATGGAATGGGAAAAAAGTTCACAAATCCAATGCTGCTGGAAGAAGAACTCAAGAAATTCAAGAGAGAATTTGAAGCATATCAAGCATTAAGGCTTAAGGAGTGTCCAAAAGTTGATGAAAGAATTCGAAGCGTTTCGCAAAGAACCAAGAGTGTTCAAGAAWTGGTTCCATGTAATACAAATTCAAAGACAAAGAGAAAGGGAAAGGGAAAGGTAGCAATGAACAAATCTAGAAGAAGATTTGAWGATACATCACTTTCACCAACTCAGATAACTATCTTGAAGCCTTRTTGCTACCATGAAGAGAGTTTGATCAATTCATCAGAAACTTCACAAGGGAGAACAAGTACTGGTKTAAAAGATTTTCTTGAGGAAGGGAAAAGTACTTTGGAAAAGTGTTCTTCATCGGTTCGAGGAAGCGAAAATGAGAGACATAACAYTAAAAAACAATCCAATTCTAAAGAAGTGGTTTGTCATAGATCAAGTGAGTTCATAGATTTTGTGACTAGGGATGTTGTTGAAGCAAATTTACTCCATTCACAATCAACAAGATCTTWTCGAAGTGAAATCGAGTTCAATGGACAGAGTTCCCCTGAATTTATCAGCAGAGGAACAATGAAGTATGCAAATTTGAATGATGATTCATTGCTTCAGAAGGAGTTATCTCCAATGAACCTTGTAAGATCCTTSTCAGCTCCTCTATCAGGAAGATTTAGCCGCTTTTCGAACGGTGATCAAATTCGGAAGAAGCTTGAAGATCTTGAAAGGATGTCTTTTGATGCTAAGAAGAAGAAGAAAGATAGATTTGGAATTAGAGAAAAAGTTTCTTATCTTAAACAAAAGTTTGGTCTAAGAGGCAAGATTTTTGCCAAAAGGATTCATTCAATGGTTGAAACTCCTAATAGCATTGAAGATGGTTTCATGGTGAGAGACATTAGAAGTGGACCAACTGTTCTCATGAAACATGGGAGAAACCATGATAACTTCACCGAGGTTCCTCCTAGTCCTGCATCTATGTGTAGCAGTGTTCATGAAGAACTTTGGAGGCAGAATGCAATTTTAAGTCCAATTTCAACTCCAAGTGTATCTTCAGTAGATGATAGCATTATGCCACAGGTTTATGGAGATATCAGCTCTGATTTAAATGAACTAAGTAAGCAACTTAGCCAACTTGAGTTTGACAGCTCAGAGGAATTCGCAACAAAGCGAAAATCTGCCGAGTACAAATTAGAACGGCTACTCGATCCGGCGGAGACTTATATAAGAGATCTTCTTGTTGCTTCTGGACTTTACTTTGGATCATGGGACAAATACCTTCAAAGAGAGGACACATTTACAAAGCCTATAGCCAACTCAATTTTTGAAGAAGTGGAAGAATCTCACAAGAAATGTTTGGTTAAAGAGAATATTATTGATAACAAGTTAGATCACAAAATGTTACTTGATTTGTTAAACGAGGCACTTTCCATTGTTCTTGGACAACCTTTGACAATGTCTAAATTCAGAAGGAAACTCAATAATTCATGCATAATACAAACTCCACCATGTGGGAAGGAACTATTGAAGCTAGTATGGGACATTATCCATGTTTCGTTGTATCCTCCAATGTCTAACACATGTTCTTATTCATTTGATAGTTTGAAGGCACAAGATTTTGGATCCATGTCATTGTATGGACTAATGAATGATGAGATCAATGTCTTAGAAATGGAGATGGCATGTTCAATTAGTGATGATTTGGTTGAAGAACTCATAAAGGATATGATGGGATTTTAA 2121 0.364 MARKVHNHKRHSEGMNNSQXSMKLQEEASKIMYNPEVKLPHSTKGSKNNGYSNVNSVRELMNEELSTQSCNRNNVPSIVARLMGLDMMPLGSRSVVLLSDQCITDQNMENKIFDDDGMGKKFTNPMLLEEELKKFKREFEAYQALRLKECPKVDERIRSVSQRTKSVQEXVPCNTNSKTKRKGKGKVAMNKSRRRFXDTSLSPTQITILKPXCYHEESLINSSETSQGRTSTGXKDFLEEGKSTLEKCSSSVRGSENERHNXKKQSNSKEVVCHRSSEFIDFVTRDVVEANLLHSQSTRSXRSEIEFNGQSSPEFISRGTMKYANLNDDSLLQKELSPMNLVRSXSAPLSGRFSRFSNGDQIRKKLEDLERMSFDAKKKKKDRFGIREKVSYLKQKFGLRGKIFAKRIHSMVETPNSIEDGFMVRDIRSGPTVLMKHGRNHDNFTEVPPSPASMCSSVHEELWRQNAILSPISTPSVSSVDDSIMPQVYGDISSDLNELSKQLSQLEFDSSEEFATKRKSAEYKLERLLDPAETYIRDLLVASGLYFGSWDKYLQREDTFTKPIANSIFEEVEESHKKCLVKENIIDNKLDHKMLLDLLNEALSIVLGQPLTMSKFRRKLNNSCIIQTPPCGKELLKLVWDIIHVSLYPPMSNTCSYSFDSLKAQDFGSMSLYGLMNDEINVLEMEMACSISDDLVEELIKDMMGF* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 326 703 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 129 181 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 113 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 167 322 - -
Amo01g0943 706 MobiDBLite consensus disorder prediction 219 269 - -
Amo01g0943 706 Pfam DUF761-associated sequence motif 76 89 IPR032795 -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 326 703 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 129 181 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 113 - -
Amo01g0943 706 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 167 322 - -
Amo01g0943 706 MobiDBLite consensus disorder prediction 219 233 - -
Amo01g0943 706 MobiDBLite consensus disorder prediction 252 269 - -
Amo01g0943 706 Pfam Domain of unknown function (DUF4378) 534 698 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0943 Amo-Chr1 12537661 12540636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0943 63 703 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 34.200 2.67e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0943 - - aip:107621743 1326.61