Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0942 ATGATGTCGTGTTCTCCATCATCATCATCATCTGAAGAAGAAGATGAGAGCTTTGAATCTTATCGAAGAGGAGGGTATCATGCTGTTAAAATTGGTGATCAATTTGCAGGTGGTAGGTACATAGCACAAAAGAAGCTTGGTTGGGGTCAATTTTCCACCGTTTGGCTTGCTTATGATACTAAAGATGAGAAATATGTTGCTCTAAAGATCCAGAAAAGTGCAGCACAATTTGTTCAAGCTGCACTTCATGAGATTGATATCCTTTCAGCCATTGGAGATGGATCTCCTTCACACACAAAATTTGTTGCTCAACTAATTGATCACTTTAAGCACACAGGTCCAAATGGCAATCACCTTTGCATGGTTCTTGAGTTTCTTGGTGACAGTTTGCTTCGTCTAATCAAATACACTCGTTACAAAGGAATTCCACTGAAAAAAGTTAGGGAGATTTGCACTTGTATATTGATTGGTTTGGATTACTTGCATAGAGAACATGGCATCATCCACACTGACCTAAAACCCGAAAATATTCTTCTTATTTCTCCCATCAATCCATCTAGAGACCCTTTAAGCACAGGAGCATCTCCCATTCTAGAAAGACCTGAGGGAAGCATCTCTCCATCTCCTAGTCACATGGAGAAGAGGCTTAAGAGGAGGGCGAGGAGGATGAGTATGAGTTTATCAATGGGGCGAGGCGATTCAATAGACGAATATCCGAAAAGGAACATAGAAGAAATTGATGTTAGGTGCAAGATAGTTGATTTTGGGAATGCTTGTTGGGCTGATAATCAATTTACAGATTTGGTTCAAACAAGGCAGTATAGAGCTCCTGAGGTTATATTGCAAGCTGGCTATTCCTACTCTATTGATATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTCAACCCTAGGGCTGGACAGGGTTTTAGTGAGGATGAGGATCACCTTGCTTTGATGATGGAACTCCTAGGAAAGTTCCCTAAGAAGGTATATATAGTATACAATGCTACTTCTTGGGCGAAATGTAAGGATTCTTTAAAGATTTGGAGATTGAAAAGAATTAGGAGACTAAAATGTAGAAATGCCAATGAATTTCAGAATATTCTTTTGCCACTTCTTGATCTTTCACCAGAGAAAAGGCCAAGTGCACAACAATGCTTGCAACACCCTTGGATCAAGGACATAGACTATGCTCCATTTGACATCATCAATAATGGAAATAGTCTTGAAAATCTCAATGTTGGCATGAGAAACCTTCAAATTGCTGTAGGAAGTGAATCAATTGGAGAAAAATTCATAAGATTCTTTATTTATTTATTTATTTACTTCTTGGGCTCACTTGCAAAAATGCAATAA 1377 0.3878 MMSCSPSSSSSEEEDESFESYRRGGYHAVKIGDQFAGGRYIAQKKLGWGQFSTVWLAYDTKDEKYVALKIQKSAAQFVQAALHEIDILSAIGDGSPSHTKFVAQLIDHFKHTGPNGNHLCMVLEFLGDSLLRLIKYTRYKGIPLKKVREICTCILIGLDYLHREHGIIHTDLKPENILLISPINPSRDPLSTGASPILERPEGSISPSPSHMEKRLKRRARRMSMSLSMGRGDSIDEYPKRNIEEIDVRCKIVDFGNACWADNQFTDLVQTRQYRAPEVILQAGYSYSIDMWSFACIAFELATGDMLFNPRAGQGFSEDEDHLALMMELLGKFPKKVYIVYNATSWAKCKDSLKIWRLKRIRRLKCRNANEFQNILLPLLDLSPEKRPSAQQCLQHPWIKDIDYAPFDIINNGNSLENLNVGMRNLQIAVGSESIGEKFIRFFIYLFIYFLGSLAKMQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0942 458 PANTHER OS07G0472400 PROTEIN 9 409 - -
Amo01g0942 458 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Amo01g0942 458 Pfam Protein kinase domain 41 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0942 458 Pfam Protein kinase domain 249 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0942 458 CDD STKc_SRPK 29 399 - -
Amo01g0942 458 Gene3D Phosphorylase Kinase; domain 1 26 125 - -
Amo01g0942 458 Gene3D Transferase(Phosphotransferase) domain 1 94 399 - -
Amo01g0942 458 SUPERFAMILY Protein kinase-like (PK-like) 34 406 IPR011009 -
Amo01g0942 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Amo01g0942 458 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 409 - -
Amo01g0942 458 MobiDBLite consensus disorder prediction 190 212 - -
Amo01g0942 458 ProSiteProfiles Protein kinase domain profile. 40 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0942 458 SMART serkin_6 40 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0942 Amo-Chr1 12533630 12537082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0942 8 402 EF-hand Containing Proteins AT5G22840 45.119 7.13e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Amo01g0942 Pkinase 1.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0942 K08832 - gmx:100814976 567