Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0938 ATGAGCAAAGATTGGGTTCTTATTGTGTTTGTGATATTTGTTTCAAGTAGTGGAATATTATTCAGCAATAATGTTTGTGCAAAACCACCTCCTAATGTTAACATAGGAGCAATTTTAGCTCTCAACTCAACCATTGGAAAGGTGGCGAAAATTGCTATAGAAGCAGCAGTGAATGATGTAAATTCAGATTCAACCATTCTCAGTGGAACCAAGCTTAACATCTCTATGCAAGACACAAAATTATCAACTGGATTTCTAGGAATCATTGACTCATTGCTATTGATGGAGAAAGACACTGCAGCCATAATTGGTCCACAATACTCAGTAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTATTGATCAATTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGGGTTGCTGCATTAGGTGATAAGCTTGCCGAAAAACGTTGCAAGATATCACACAAAGCAGCCCTTAAGCCTGATGATACCAATGTCAACAAGGAAGAAATCAATAGTGCATTAGTTAAAATTGCTTTAATGGAGTCTAGGGTTATAGTTCTTCACATTTACCCTTCTTTTGGCCTTGAAGTTCTTCATATTGCACAATCATTAGGCATGATGGTAAGTGGTTATGTGTGGATAGTTACTGATTGGCTCACAACTGCTCTTGATTCTGATCCATCATTGGCTACAACTTCAATCATGAATGATATGCAAGGTGTTATCACCTTGAGAATGCACACACCAGATTCAAGAATCAAGAGCAATTTTGAGTCTAGGTGGCCCAAACTAGCTCATCAAAATAATGATGAGGGTCCTTTTGGGTTGAACATCTTTGGTTTATATGCTTATGACACTGTTTGGACCTTAGCTTATGCACTTGATGCATTCTTTAGAAGTGGTGGAACTTTGAAATTTTCAAATGATTCAAGTCTAAACACTTTAAGGGGTGATGGTGATACCCTTCATCTTGATACTATGGGAATGTTTCTTAATGGTAGCATGTTGCTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGYCSRRTRRWGTTTTCTCAAGATGGAAACCTAATGAATCCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTCTGGTCTTCACACTGGTGAACAAGTTCCAAACCATGGAAATTCAAGTGAATTAGGGCTTTATGGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCCAACAATGGAAAACAATTGAGAATTGGGGTGCCACTTAGGGTTAGCTACCATGAATTTTTTCTTTTCATCATTACCATTACCACAAACAGAACTAAGATTGTGGATTTCACACAACCATACATTGAATCCGGTTTAGTTGTTGTGGCACCAATAAGGAAGATGAAATCTAATGCTTGGGCCTTTCTAAGACCATTTACTCCAATGATGTGGCTTGTCACAGGAATGTTTTTCTTAGCTGTTGGGGCTGTTGTTTGGATTTTAGAACGTCGCTTGAATGATGATTTTAGAGGCACTCCTAGGAGACAATTTGTCACCATTATATGGTTTAGCTTCTCAACCTTGTTCTTTGCACATAGAGAGAAAACTGTTAGCACTCTTGGCCGATTAGTCTTAATCATATGGCTGTTTGTGGTTTTAATACTGAATTCAAGCTACATTGCAAGCCTAACATCAATCCTCACAGTGGAACAACTCTCTTCCCCAATTAAGGGGATTGAAAGCTTAGCAACAAGCAATGAAAGAATTGGTTACTTGAGAGGATCATTTGCTGAGAATTATCTAACAGATGAACTCAACATACATAGGTCAAGGCTTGTTCCTCTCAATGACCCTTCAGAATATGAGAAGGCGTTGAAGGATGGAGCTGCTAATGGTGGTGTTGCTGCAATCATAGATGAACGTGCATACATGGAGTTGTTCCTAGCAACTAGGTGTGAATTTGGGATTGTTGGTCAAGAGTTTACCAAGATGGGTTGGGGCTTTGCCTTTCCAAGAGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTCTCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGCTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAGCAAGGGATAGATAGGCTTGAGACTAAGAGCTTTTGGGGCCTCTTCCTTCTTATTGGCATTGCATGCTTCATTGCTCTCCTTTGCCATGTTATTAGAATGACCTACCGTTTTAAGAGGCATTATTCAAACAACACTACTAGTAATGACAACCTTGGAGGCTCATCATCTTCTTCTTCGCGTTCTTCTCGTATCAAATCTTTCTTTTCATTTGTCAATGGAAGAGAAGAGGAAGAAGAGATGGAAGATAAAAATGGGAAAAAGAGAAGGCGCAAAGATAACAGAGTGGCTCATGAAGGAGAGGTTTCAACATTGCATGATTCAAACGTTAGCATCCATGTTGAAAATGGTGCCTAA 2652 0.3903 MSKDWVLIVFVIFVSSSGILFSNNVCAKPPPNVNIGAILALNSTIGKVAKIAIEAAVNDVNSDSTILSGTKLNISMQDTKLSTGFLGIIDSLLLMEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIIDQFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRCKISHKAALKPDDTNVNKEEINSALVKIALMESRVIVLHIYPSFGLEVLHIAQSLGMMVSGYVWIVTDWLTTALDSDPSLATTSIMNDMQGVITLRMHTPDSRIKSNFESRWPKLAHQNNDEGPFGLNIFGLYAYDTVWTLAYALDAFFRSGGTLKFSNDSSLNTLRGDGDTLHLDTMGMFLNGSMLLQKILEVNRTGLTGXXXFSQDGNLMNPSYEIINVIGTGVRRIGFWSNSSGLHTGEQVPNHGNSSELGLYGVIWPGQTTQTPRGWVFANNGKQLRIGVPLRVSYHEFFLFIITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSNAWAFLRPFTPMMWLVTGMFFLAVGAVVWILERRLNDDFRGTPRRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLATSNERIGYLRGSFAENYLTDELNIHRSRLVPLNDPSEYEKALKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCHVIRMTYRFKRHYSNNTTSNDNLGGSSSSSSRSSRIKSFFSFVNGREEEEEMEDKNGKKRRRKDNRVAHEGEVSTLHDSNVSIHVENGA* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0938 883 MobiDBLite consensus disorder prediction 841 865 - -
Amo01g0938 883 Gene3D - 521 660 - -
Amo01g0938 883 Pfam Receptor family ligand binding region 51 417 IPR001828 -
Amo01g0938 883 Pfam Ligand-gated ion channel 757 788 IPR001320 GO:0015276|GO:0016020
Amo01g0938 883 PANTHER GLUTAMATE RECEPTOR 492 879 - -
Amo01g0938 883 PANTHER GLUTAMATE RECEPTOR 25 488 - -
Amo01g0938 883 SUPERFAMILY Periplasmic binding protein-like I 27 465 IPR028082 -
Amo01g0938 883 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 492 879 - -
Amo01g0938 883 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 488 - -
Amo01g0938 883 SMART GluR_14 475 757 IPR001320 GO:0015276|GO:0016020
Amo01g0938 883 SUPERFAMILY Periplasmic binding protein-like II 449 757 - -
Amo01g0938 883 Gene3D - 51 407 - -
Amo01g0938 883 Gene3D - 670 762 - -
Amo01g0938 883 PIRSF IGluLR_plant 491 880 IPR017103 -
Amo01g0938 883 PIRSF IGluLR_plant 1 489 IPR017103 -
Amo01g0938 883 Pfam Bacterial extracellular solute-binding proteins, family 3 492 756 IPR001638 -
Amo01g0938 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Amo01g0938 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Amo01g0938 883 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Amo01g0938 883 CDD PBP1_GABAb_receptor_plant 34 432 IPR044440 -
Amo01g0938 883 Gene3D - 149 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0938 Amo-Chr1 12482632 12488028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0938 1 860 Ion Channels AT1G42540 52.721 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0938 K05387 - gmx:100790502 1273.07