Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0935 ATGGAGAAAGACACCGCAGCCATAATTGGTCCACAATACTCAGTAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTATTGATCAATTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGGGTTGCTGCATTAGCATTAATATTGATGGAGAAAGGCACTGTGGCAATAATTGGTCCACAGTACTCAGAAATGGCACATGTAATCTCACACATTGCAAATGAGGTGCAAGTACCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTRTTGATCAMTTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGGGTTGCTGCATTAGGTGATAAGCTTGCCGAAAAACGTTGCAAGATATCATATAAAGTACCCTTTAGGCCTAATAATAATAACAACATTAGTGAAGAAGAAATAAACAATGCATTATTCAAGATAGCTTTGATGGAATCAAGGGTAATAGTTGTTCATATAGTAGCAGATTTAGGGTTAAAAGTTCTTAAGGTTGCTCAATCACTTAGCATGATGGGGAGTGGTTATGTGTGGATAGCCACTGATTGGCTTTCCACTGTGTTAGATTCAAACCCTTCATTGTCCACAAGTTCAGCCATGAATGACATCCAAGGTGTTATTACCTTGCGCATGTATACACCTGATTCAGAATTGAAGAGAAAATTTGTGTCTAGGTGGAATAATAACCTAACCCTAAAAATGAATCATCAAGAGGGTCCTTTTGGATTGAACACCTTTGGTTTATATGCTTATGACACTGTTTGGGTCATAGCTTATGCTCTTGATGCTTTGTTTTCTGGGGGAAATAATAATAATAATAATAATAACAACAATCATAATATTTTATTCTCAAATGATTCAAGTCTAAACTTGTTAAGGGGTGACTCACTTCATCTTGATACTATGGGGGTGTTTATAAATGGTAGCACATTGCTTCAGAAGATTCTAGAAGTTAATCAAACCGGTTTAACCGGGCGGATGATGTTTGATTTAGATGGAAACTTGTTGAACCCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATATTGGTCAGAATCATATGGTCTTCACACTGGTGAAGAAGTTCCAAATGATGGAAATTCAAGTGAAGGGCTTTATGGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCTAGCAATGGAAGACATTTGAGAATTGGAGTGCCACTTAGGGTTAGCTACCATGAGTTTGTGTCAAGAATTGAAGGCACTGACATGTTTGGTGGTTATTGCATTGATGTGTTTTTTGCAGCACTAAATGTGTTGCCTTATACGATTCCATACAAATTTGTTTCTTTTGGTAATGGGAGAACCAATCCCTTGAATTCAGAACTTCTCCATCAGATCACAATTGGTGCCTTTGATGCCGTTATTGGGGATATTACTATTACTACAAACAGAAGTAAGATAGTGGATTTCACTCAGCCATATATAGAGTCAGGGTTAGTGGTTGTGGCACCTATCAAGGAATTGAAATCAAGTGCTTGGGCCTTTCTTATACCATTTACTCCAATGATGTGGTTTGTCACAGGAATGCTTTTTCTAATTGTTGGAGTTGTTGTGTGGATTTTAGAGCGGCCCTTTAATGATGACTTTAGAGGACCAATTAGAAGACAATTAGTCACTCATCTATTTTATAATAACAAACTAAAAAATTTTTTCTTTCAATTACATCTATATCATGAATTTGAGAAGGCTTTGAAGGATGGACAAGACAATGGTGGTGTTGCTGCTATCATAGCTGAGCGTATTCAATTTGGTATTGTTGGCCAAGAATTCACCAAAATGGGATGGGGCTTTGCCTTTCCAAGGGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTATCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGYTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAACAAGGCATTGATAGGCTTGAGACTAAGAGCTTTTGGGGCCTCTTCCTTCTTATTGGCATTGCATGCTTCATTGCCCTCCTTTGCTATCTTATTAGAATGACCTACCGTTTTAGGAGGCACTACTACTCCAATAGTACCAACCTTGAAGTCCCATCATCATCATCATCATCATGCTCTTCTTGTCTTAAATCATTCTTTTCTTTTGTCAATGAAAAGGAAAAGTAA 2463 0.3792 MEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIIDQFQWRDVIAIFIDDDHGRNGVAALALILMEKGTVAIIGPQYSEMAHVISHIANEVQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIXDXFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRCKISYKVPFRPNNNNNISEEEINNALFKIALMESRVIVVHIVADLGLKVLKVAQSLSMMGSGYVWIATDWLSTVLDSNPSLSTSSAMNDIQGVITLRMYTPDSELKRKFVSRWNNNLTLKMNHQEGPFGLNTFGLYAYDTVWVIAYALDALFSGGNNNNNNNNNNHNILFSNDSSLNLLRGDSLHLDTMGVFINGSTLLQKILEVNQTGLTGRMMFDLDGNLLNPSYEIINVIGTGVRRIGYWSESYGLHTGEEVPNDGNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRVSYHEFVSRIEGTDMFGGYCIDVFFAALNVLPYTIPYKFVSFGNGRTNPLNSELLHQITIGAFDAVIGDITITTNRSKIVDFTQPYIESGLVVVAPIKELKSSAWAFLIPFTPMMWFVTGMLFLIVGVVVWILERPFNDDFRGPIRRQLVTHLFYNNKLKNFFFQLHLYHEFEKALKDGQDNGGVAAIIAERIQFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCYLIRMTYRFRRHYYSNSTNLEVPSSSSSSCSSCLKSFFSFVNEKEK* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0935 820 SUPERFAMILY Periplasmic binding protein-like II 462 737 - -
Amo01g0935 820 SMART GluR_14 485 737 IPR001320 GO:0015276|GO:0016020
Amo01g0935 820 Gene3D - 151 445 - -
Amo01g0935 820 Gene3D - 598 666 - -
Amo01g0935 820 PANTHER GLUTAMATE RECEPTOR 92 649 - -
Amo01g0935 820 PANTHER GLUTAMATE RECEPTOR 1 92 - -
Amo01g0935 820 SUPERFAMILY Periplasmic binding protein-like I 97 477 IPR028082 -
Amo01g0935 820 Gene3D - 93 420 - -
Amo01g0935 820 PIRSF IGluLR_plant 1 93 IPR017103 -
Amo01g0935 820 PIRSF IGluLR_plant 90 658 IPR017103 -
Amo01g0935 820 PIRSF IGluLR_plant 650 811 IPR017103 -
Amo01g0935 820 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 92 649 - -
Amo01g0935 820 Gene3D - 1 86 - -
Amo01g0935 820 Gene3D - 667 742 - -
Amo01g0935 820 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo01g0935 820 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo01g0935 820 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo01g0935 820 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo01g0935 820 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 92 - -
Amo01g0935 820 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 654 819 - -
Amo01g0935 820 PANTHER GLUTAMATE RECEPTOR 654 819 - -
Amo01g0935 820 SUPERFAMILY Periplasmic binding protein-like I 3 92 IPR028082 -
Amo01g0935 820 Pfam Receptor family ligand binding region 3 93 IPR001828 -
Amo01g0935 820 Pfam Receptor family ligand binding region 95 430 IPR001828 -
Amo01g0935 820 Pfam Bacterial extracellular solute-binding proteins, family 3 545 591 IPR001638 -
Amo01g0935 820 Gene3D - 480 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0935 Amo-Chr1 12433797 12445615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0935 1 92 Ion Channels AT1G42540 70.652 4.30e-37 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0935 K05387 - gmx:100790502 864.374