Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0927 ATGATTAGAAATTGGGGCGTTGTGGTGTTGATTGTTCTTCTCTCCAATGGTTTCTGTTCAAATGGGGTTGACTTGGATGATATTGATATTGATAATAATAATAGTAATAATACCACAATTCCTGATGTTGTAAATATTGGGGTTCTTTTCTCTTTCAATACAAGTGTTGGCAAAATTGTGAAAATCGCCGTAGAAGCCGCAGTTAAAGATGTAAATTCTGATCCATCAATTCTTGGCAAAACTCAGCTCAAGCTCTCACTTCAAGAAGATTCCAAATATAGAGGATTCTTGAGCATTGCTGAGGCATTGCAGCTCATGGCAACACACACTGTGGCCATAATTGGCCCACAGACCTCCACAACAGCTCATGTCATATCTCACATTGCGAACGAGCTTCGAGTTCCCCTGCTGTCGTTTACAGCCACTGACCCCACCCTTTCTTCGCTTCAGTTCCCATTCTTCATTCGGACATCTTTTAATGATATGTATCAGATGACTGCAATAGCAGATCTTGTTAACTACTATGGTTGGAGGGAGGTTATTGCAGTCTATGGTGATGATGATCATGGGAGGAATGGAATTGGTGCCTTAGGGGACAAGCTAGCTGAGAGGCGCTGCAAGATCTCGTTTAAAGCTCCTATGAGTCCTGAGGCAACCAGGGAGGAGATCACTGATGTGCTTGTTCAGGTAGCTCTGGCTGAATCGCGGGTTATAGTCCTTCACACAAGTACTACTTGGGGGCCAAAAGTGCTAAATGTGGCGAAATCTCTTGGAATGATGGAAAATGGTTATGTCTGGATAGCCACAACTTTTCTGTCTACCGGGATAGATATAAGTTCTCCACTTTCTTTGAGTGTAATGGATGACATTCAAGGAGTTATTGCGCTACGAATGTATGTGCCGGATTCAAAGCTTAAGAGATCTTTCATTTCGAGGTGGAAAAACTGGACTAATGGCTCCCTTGGATTGAGTACTTATGCTATCTTTGCATATGATACTGTCTATGTTCTTGCTCATGCGCTTGCTGCATTTTTTAAACAAGGGAACCGAATCACCTTTTCATCTGATTCAAAGACATCTCTAATACATGGTGACAACATGCATCTTGATGCTGTCAAGATATTCAACGAAGGAAAACTGCTGCGAAAAAGTATCTACGAGGTTAACATGACCGGTGTAACAGGTCACTTCAAGTATACATCTGATGGAAACCTTGCAAATCCGGCATATGAAATCATCAATGTGGTTGGAACAGGGACTAAGAGGATTGGTTATTGGTCTAATCACTCTGGACTATCATCTGTAAGTCCTGAAGAACTTCATTCAAAGCCGGCTAGTCATTCAAGTTCAAGTCAAAAGCTACTATCTGTGATTTGGCCAGGGGACACAACACAGAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGCTAAAAATTGGAGTTCCAAAAAGGATCAGTTACCGCGAATTCGTCTCACAAGTAAAAGGCACTGATATGTTCAAGGGGTTCTGCATTGATGTCTTTCTTTCTGCAGTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTATTTCGTACGGAGACGGTCACAGCAATCCTAGTAACACTGAACTTGTCCGTCTGATCACCACCGGTGTGTTTGATGCTGCTGTAGGTGATATTACAATTACCACAGAAAGAACAAAGATGGTGGATTTTACGCAGCCATTCATCGAGTCCGGTCTAGTGGTAGTAGCATCAGTGAAGAAGACAGACTCAAATGCTTGGGCATTCTTGATGCCATTTACTCCAATGATGTGGACTGTCACAGCTATCTTCTTCCTAGTTGTTGGTGCTGTTGTCTGGATTTTAGAGCATAGGCTCAATGATGATTTTAGGGGACCTCCCAAAAAACAAGTAGCCACAATTTTGTGGTTCAGTTTCTCAACCATGTTTTTTGCCCATAGGGAAAACACAGTGAGCACTCTCGGTCGATTCGTGCTGCTTATATGGTTATTCGTAGTTCTCATAATCAACTCGAGTTATACAGCAAGCTTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCAATAAAGGGCATTGAAAGTTTGATAAACAACAATGAGCCTATTGGCTACTTGCAGGGTTCTTTCACTAAAGGTTATTTAGTCAACGAAATTGGCATCGATGCGTCGAGACTTGTAGCTCTAACAACACCAGAAGAATCTGCCACTGCTCTGGACAAAGGTCCCCATAAAGGTGGCATCGCTGCATATGTCGACGAACGTGCATACATAGAGCTGTTCCTTTCAAGCCGCTGCGATTTCAGCATTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCGGTTGACCTGTCAACAGCCATTTTGGAGTTGGCTGAGAACGGCGACCTTCAACGGATCCACGACAAATGGCTTTTGCGCAGTGCTTGCCTGTCGCAAGGTGCGAAGCTCGAAGTGGACAGACTCAAGCTGAGGAGCTTCTGGGGTCTCTACCTACTCTGTGGCTTGGCATGTTTGATTGCTCTCTTCGTATATCTATTTCAAACCATGAAGCAATACAAGAAGCACTACACCGAAGACGACAAGTCGTCGTCCGGTCTAAAGTCCACGCCGTCGCGACTAAGGACTTTCCTTACATTTGTAGATGAAAAGGAAGACACAGTTAAGAGCCGCTCCAAGAGAAGGAAAACGGAGATGGCATCATTCAAAAGTACAAGTGAGGTTGGATCATCCAATAATGGATATTCAGAATCATCTTCTCAGAGAATTGAGTGTACTAATAATGAGACATGA 2835 0.4328 MIRNWGVVVLIVLLSNGFCSNGVDLDDIDIDNNNSNNTTIPDVVNIGVLFSFNTSVGKIVKIAVEAAVKDVNSDPSILGKTQLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELRVPLLSFTATDPTLSSLQFPFFIRTSFNDMYQMTAIADLVNYYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVLHTSTTWGPKVLNVAKSLGMMENGYVWIATTFLSTGIDISSPLSLSVMDDIQGVIALRMYVPDSKLKRSFISRWKNWTNGSLGLSTYAIFAYDTVYVLAHALAAFFKQGNRITFSSDSKTSLIHGDNMHLDAVKIFNEGKLLRKSIYEVNMTGVTGHFKYTSDGNLANPAYEIINVVGTGTKRIGYWSNHSGLSSVSPEELHSKPASHSSSSQKLLSVIWPGDTTQKPRGWVFPNNGRMLKIGVPKRISYREFVSQVKGTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITTGVFDAAVGDITITTERTKMVDFTQPFIESGLVVVASVKKTDSNAWAFLMPFTPMMWTVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINNNEPIGYLQGSFTKGYLVNEIGIDASRLVALTTPEESATALDKGPHKGGIAAYVDERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLRSACLSQGAKLEVDRLKLRSFWGLYLLCGLACLIALFVYLFQTMKQYKKHYTEDDKSSSGLKSTPSRLRTFLTFVDEKEDTVKSRSKRRKTEMASFKSTSEVGSSNNGYSESSSQRIECTNNET* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0927 944 MobiDBLite consensus disorder prediction 898 915 - -
Amo01g0927 944 Pfam Receptor family ligand binding region 61 417 IPR001828 -
Amo01g0927 944 Gene3D - 160 432 - -
Amo01g0927 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 930 - -
Amo01g0927 944 Gene3D - 62 407 - -
Amo01g0927 944 Gene3D - 590 714 - -
Amo01g0927 944 PIRSF IGluLR_plant 6 944 IPR017103 -
Amo01g0927 944 Pfam Ligand-gated ion channel 820 852 IPR001320 GO:0015276|GO:0016020
Amo01g0927 944 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Amo01g0927 944 Gene3D - 789 819 - -
Amo01g0927 944 Pfam Bacterial extracellular solute-binding proteins, family 3 536 819 IPR001638 -
Amo01g0927 944 CDD GluR_Plant 477 819 - -
Amo01g0927 944 PANTHER GLUTAMATE RECEPTOR 33 930 - -
Amo01g0927 944 MobiDBLite consensus disorder prediction 898 944 - -
Amo01g0927 944 Gene3D - 749 788 - -
Amo01g0927 944 SMART GluR_14 480 821 IPR001320 GO:0015276|GO:0016020
Amo01g0927 944 Gene3D - 478 589 - -
Amo01g0927 944 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Amo01g0927 944 MobiDBLite consensus disorder prediction 916 944 - -
Amo01g0927 944 CDD PBP1_GABAb_receptor_plant 45 435 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0927 Amo-Chr1 12402213 12407399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0927 41 910 Ion Channels AT3G51480 61.309 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0927 K05387 - gmx:100788917 1491.86