Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0889 ATGTGCATGCAGCTTGATGTAATTGCAAGCCTATTAAGTGGAAGACTTGTGAGAGAAAGGATTGGTCCAGCAATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAGATTAACTTTGATGATGTTCAAAACATCTTTGACACTGGTGGTGCAAAAGGCTTATCAAAAGATTCAGTTGAAAAGATCTCAAAGATCATAATTACAAGTGACAACAATGTTGATGCTTCTGGTGAAAAGGTTTCTTGCTCAGTTTGCCTTCAGGACTTTCAAATTGGAGAAACAGTTAGAAGCTTGCCCCATTGCCATCACATGTTTCACCAACCTTGCATTGACAAGTGGCTCATAAGGCATGGATCTTGCCCTCTATGTAGAAGGGATCTGTAA 387 0.4057 MCMQLDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEINFDDVQNIFDTGGAKGLSKDSVEKISKIIITSDNNVDASGEKVSCSVCLQDFQIGETVRSLPHCHHMFHQPCIDKWLIRHGSCPLCRRDL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0889 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 128 IPR013083 -
Amo01g0889 128 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 128 IPR044523 -
Amo01g0889 128 SMART ring_2 83 124 IPR001841 -
Amo01g0889 128 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 4 128 - -
Amo01g0889 128 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Amo01g0889 128 CDD RING-H2_PA-TM-RING 83 125 - -
Amo01g0889 128 Pfam Ring finger domain 82 125 IPR001841 -
Amo01g0889 128 SUPERFAMILY RING/U-box 82 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0889 Amo-Chr1 12085708 12087248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0889 5 128 C3H Transcription Factor Family AT5G66070 75.000 2.31e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0889 - - ahf:112804151 256.529