Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0888 ATGGTGATAGAAGATGAAATGAAAAAGCAACAAGAAGGACTGCAATTGCAAAGTACACGAGAAAGCACTGGCAGTAATGGAGGCAGTAATGGAAGTTCATCCAGTAAGGGTGACAATGAGTCAAACTCTATTGTGAAGTCTGAAATCCATTGGGAAAACCTTCAATTAAGAGAGGAGATTGGTCAAGGGTCTTATGCAGTTGTGTATCACGGAATATGGAATGGATCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATACACAGAGGAGACCTTACATGACTACAAAAAAGAGATTGATATAATGAAGAGACTAAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCGCAGGAAAGGCTTGCCATTGTAACAGAACTATTACCTAGGGGAAGCCTTTTCAAAATTCTTCACAGGAGTAATCAGCCACTAGATATCAGAAGGCTTTTAAGGATGGCTCTTGATGTTGCTAAAGGTATGAATTATCTTCATCATAGAAATCCACCCATTGTGCATAGAGACCTAAAGTCTTCTAATCTGCTTGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGTTTGTCAAGGTTGAAGGATTCAACTTTATTGACTTCAAAAGGAAGAGGCACTCCTCAATGGATGGCCCCTGAAGTCCTACGAAATGAGCCTTCCAATGAAAAGTCGGATGTGTACAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAGTCCATTCCATGGGAAAATTTGAATTCCTTACAGGTGGTTGGAGTAGTAGGATTTATGGATAGAAGACTTGAGCTTCCGGAAGGGCTTGATCCCCAAGTGGCATCAGTCATTCGTGACTGCTGGCAAAGTGACCCAGAACAACGCCCATCGTTTCAAGAGCTAATACAGAGAATGATGTTCCTTGTTAACAAAGTAAACGCAGTGTCAATTAGGAGAAATTCAGAATCATAA 972 0.4084 MVIEDEMKKQQEGLQLQSTRESTGSNGGSNGSSSSKGDNESNSIVKSEIHWENLQLREEIGQGSYAVVYHGIWNGSDVAVKVYFGNGYTEETLHDYKKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKILHRSNQPLDIRRLLRMALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDSTLLTSKGRGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELMTQSIPWENLNSLQVVGVVGFMDRRLELPEGLDPQVASVIRDCWQSDPEQRPSFQELIQRMMFLVNKVNAVSIRRNSES* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0888 323 MobiDBLite consensus disorder prediction 1 42 - -
Amo01g0888 323 CDD STKc_MAP3K-like 60 305 - -
Amo01g0888 323 MobiDBLite consensus disorder prediction 12 42 - -
Amo01g0888 323 Pfam Protein tyrosine and serine/threonine kinase 54 304 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 Gene3D Phosphorylase Kinase; domain 1 47 131 - -
Amo01g0888 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Amo01g0888 323 Gene3D Transferase(Phosphotransferase) domain 1 132 322 - -
Amo01g0888 323 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 17 304 - -
Amo01g0888 323 ProSiteProfiles Protein kinase domain profile. 54 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0888 323 PANTHER SERINE-THREONINE PROTEIN KINASE 17 304 - -
Amo01g0888 323 SUPERFAMILY Protein kinase-like (PK-like) 43 311 IPR011009 -
Amo01g0888 323 PRINTS Tyrosine kinase catalytic domain signature 213 223 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 PRINTS Tyrosine kinase catalytic domain signature 167 185 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 PRINTS Tyrosine kinase catalytic domain signature 232 254 IPR001245 GO:0004672|GO:0006468
Amo01g0888 323 SMART serkin_6 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0888 323 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Amo01g0888 323 PIRSF ILK 12 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0888 Amo-Chr1 12075845 12079586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0888 24 311 MAP Kinase Kinase Kinase AT4G23050 68.512 1.33e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo01g0888 PK_Tyr_Ser-Thr 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0888 - - gmx:100813707 551.977