Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0887 ATGCCGGTGATTCGAATCACACTAGTTTCATTGAGAAAATCATGGAGTTGCAATTATCGGCTATGTAAGAATAATGTTTGTGGAATCTCATCTAAAATTGAAACTACCAAAAGGGTGTTTATCAGCTATAAAGAAATTTCTTCTTCACATAATCATAAGGTTGAAGCAATGGTTGATGAATATAGAAGTATGGTGGAGAACCCATCACCAATGGGAAACGCAACAAATCACATGATGCTGGGATTTCTTGCTGGAATTTCGACAGTTATGTTAGTTGCTGCCATATTGTTCTGCCTCTTTGGAACAAAGCTCACTGCACTTTTCAAACAACATAGGACTTTGAAAGGTAAAGAGTACAAAAGCTTCAAAGATGAAACAATGCCGCTAAGGCGTTTTACCTTTGATGAAATAGAGAGAGCTACCAAGAACTTTAGCCAAGAATTCTTACTTGGTTCTGGTGCATTTGGAAATGTTTACAAAGGAAATTTTGAATTAGAAGGAACTTTAGCCATTAAGAGAGCTCACGGTGAATCCTTCTTAAGCGTCGATGAATTCCGAAATGAAATTAGGCTCCTTGCAACTGTAAAGCACAGAAATCTTATTGGTCTAGTGGGATTTGGGGCAAGAATTCTGGTATATGAATATGTACCAAATGGCTCTCTGCTTGAATATATGATTGGAAACAAGAATAGCTTGACTTGGAAGCAAAGAGTGAACATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTACATGAAGGAATAAAGCCGAGTATAATTCATCGTGATCTTAAACCAAGTAACATCCTATTAGGGGAAGGTTTCGAGGCTAAGGTCTCGGATTTCGGGTTGGTGAAATCCGGCCCTATCAAGGACCAATCGCATGTGAGTAGCCAAATCAAAGGGACACCAGGGTATCTTGATCCGGCATATTGTTCAAGCTTTCACGTGACAAAATTCACTGATGTTTATAGCTTTGGTGTCATACTTCTTCAACTTGTTTCAGCTAGACCTGCTGTTGATACAAATGAGGTACAAAGCAAGCAACATATAATTGATTGGGCAAGCCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATAGATGCAAACTTGCTATGTCAAAGTGAGCCATGCAATATGAGAGTTATGCTGAAGATGGGTCAACTTGCTTTAAGATGTGTGGTTCAAGAACCAAAAAGTAGACCTACAATGATTCAAGTGTGTCAAGAACTAGAACAAGCACTATACTCTGAAGATACCTTCAACAACAAGCAACATTCTTCAAAGGGTTTCCCTAAATCAATTGGATTGTCTCAGCAATCATCAGTGGAAAAGAATGATAGCTTTGTGAGCATAGATGGTGTTGGACTTCAGAAATTCCATATTGATATGGATAGCTTATCATTTCAGAGCACAAGGTTAATGTGCCTAGAAAATAATAGTATAAGTATTGACATTGATAACAACAACTTGAAGAGAATTCAAGAGGATGGGGACATATAA 1506 0.3811 MPVIRITLVSLRKSWSCNYRLCKNNVCGISSKIETTKRVFISYKEISSSHNHKVEAMVDEYRSMVENPSPMGNATNHMMLGFLAGISTVMLVAAILFCLFGTKLTALFKQHRTLKGKEYKSFKDETMPLRRFTFDEIERATKNFSQEFLLGSGAFGNVYKGNFELEGTLAIKRAHGESFLSVDEFRNEIRLLATVKHRNLIGLVGFGARILVYEYVPNGSLLEYMIGNKNSLTWKQRVNIAIGAARGIAYLHEGIKPSIIHRDLKPSNILLGEGFEAKVSDFGLVKSGPIKDQSHVSSQIKGTPGYLDPAYCSSFHVTKFTDVYSFGVILLQLVSARPAVDTNEVQSKQHIIDWASPSLEKGNVEEIIDANLLCQSEPCNMRVMLKMGQLALRCVVQEPKSRPTMIQVCQELEQALYSEDTFNNKQHSSKGFPKSIGLSQQSSVEKNDSFVSIDGVGLQKFHIDMDSLSFQSTRLMCLENNSISIDIDNNNLKRIQEDGDI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0887 501 ProSiteProfiles Protein kinase domain profile. 144 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0887 501 CDD STKc_IRAK 150 414 - -
Amo01g0887 501 SUPERFAMILY Protein kinase-like (PK-like) 123 413 IPR011009 -
Amo01g0887 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Amo01g0887 501 Gene3D Phosphorylase Kinase; domain 1 104 215 - -
Amo01g0887 501 Gene3D Transferase(Phosphotransferase) domain 1 216 435 - -
Amo01g0887 501 PANTHER OS01G0750732 PROTEIN 19 451 - -
Amo01g0887 501 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Amo01g0887 501 Pfam Protein kinase domain 147 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0887 501 SMART serkin_6 144 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0887 Amo-Chr1 12070723 12074247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0887 130 451 Receptor kinase-like Gene Family AT1G30570 42.683 3.96e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo01g0887 Pkinase 2.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0887 - - gmx:106794267 608.216