Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0871 ATGGACGTGGAGCTGCAGTTTTCTGCTGAAGTCGGCGAAAGTAGTGCATTTGGTGAAGTTCCTCGCACGTCGTTCCCACTGAGGAACGGGTGCGCGGTAACTTTGTATCAAGATGCTCATATTCCTGATGAGTGTGTGGAGAGAATGGAGAATCAGGTGCCGCAGAGATGCTGCTGGGAGGATATATTTGATGCAATCAAGAAAGCAGAGAAGTTTGTATACATTGCTGGCTGGTCTCTTGACACTGATACAAAACTGTTAAGGGATCCATCAAGGAGGACATTGCAAGAAAGAGAAACTACACTTGGTCAGCTGCTCGAGAGAAAAGCAGAGGATGGCCGTGTCAGGGTAGTACTGCTTCTTTGGAAGGATATAACAGATACTCGGTATGGTAGTGGTGGAAAAATGAAGGCTTGCGGTAGAAAAGCTTACAAGTATTTTCATAAGAAGACTCGTGTTCACTGTGTTTTATGCTCTCGTCCTCCTTTCTACTCAACATACTCACATCACCAGAAGATTGTGGTGGTGGACAGTGAGTTGCCCCTTGAAAACTCAGATAATAACAGAAAAAGAACAATAGTGAGTTTTATCGGCGGTTTGGATCTTAGCTATGGAAGATATGATACTCCTTCCCATTCACTTTTCAGGACTCTAAGAAATGAACACAAGGAAGATTTTCACCAACCGTGCTTTCCCGGCTCTTCAATAGAAAAAGGTGGTCCAAGGGAACCGTGGCATGACGTGCACTGTAAGCTTGAAGGCCCTATTGCAAAGGATGTTTACGACACCTTTGTGCAGAGATGTAAGAAGATAGGTAAAGAAGGCATTCTTGTTCCGGAGCAAGAGTTTGAAAATGTCATCGATCATTTGTACCAAGTGAAACCCCTTCAAGGTCATGGCATGTGGAACGTTCAATTATTCAGATCTATTGATGATAAAGCTACTTGTGGGTTACCAAACACTCCTGAAGGTGTTGCCGGAGCTGGTCTTGTTAGAAGGAACGGTAGAATCATAGATCGTAGCATTCAAGATGCCTATATTGATGCTATTAGGCGTGCAGAAAGATTCATTTATATTGAGAATCAGTATTTTGTAGGAAGTGGTTTTGACTGGAAAGATGATGATGGCAACAAAATTGATCACGTGAATTGTTTGAATCTCATTCCAAAGGAGATTTCACTTAAAATTGTTAGCAAGATTAAAGCTAAGCAAAACTTCACTGTGTATGTTGTGGTTCCAATGTGGCCAGAGCCTTGCCCATATGATTCTTATGTTAAGCGAATTTTGTATTACCAGAGGAGGACAATGGAGATGATGTACAGGGACATTACTCAAGCACTCAATAGGGAGAACAAAACTGAGGAAGATCTTAAAAGATATTTGCGATTCATGATTTATGTGCATTCCAAGATGATGATAGTGGATGATAAATACATAATCATTGGATCTGCTAATATGAACGAGAGATCAATGAATGGTGGCAGAGACACCGAAATTGCTATGGGAGCTTATCAACCCGTTGTGACCGAGCATGGTGCTGCTGCTACTACAACTGCAAGGGGTGAGATCCATGGTTTTCGCAAATCACTTTGGTACGAGCACCTTAACGTGCGAGATGACAGATTCGACGACCCTGAAAGAGAAGATTGCATTACAATGGTGAACACACTTGCTCAAATAAATTGGAACATGTTTGCTAGGGTTTCAGATGCAACTGACCTTCCTGGTCACCTGCTCTGCTATCCTGTTAAAATTTCTGCCAATGATGGAACTGTCACAGAGCTTTCAGGATCTTTTCGTTTCTTTCCGGACATTAAGGCCCGTGTTCTACCTGGTAAAAGCCGTGGTAGACTGATAAATGAGAAGGTCTAG 1872 0.4247 MDVELQFSAEVGESSAFGEVPRTSFPLRNGCAVTLYQDAHIPDECVERMENQVPQRCCWEDIFDAIKKAEKFVYIAGWSLDTDTKLLRDPSRRTLQERETTLGQLLERKAEDGRVRVVLLLWKDITDTRYGSGGKMKACGRKAYKYFHKKTRVHCVLCSRPPFYSTYSHHQKIVVVDSELPLENSDNNRKRTIVSFIGGLDLSYGRYDTPSHSLFRTLRNEHKEDFHQPCFPGSSIEKGGPREPWHDVHCKLEGPIAKDVYDTFVQRCKKIGKEGILVPEQEFENVIDHLYQVKPLQGHGMWNVQLFRSIDDKATCGLPNTPEGVAGAGLVRRNGRIIDRSIQDAYIDAIRRAERFIYIENQYFVGSGFDWKDDDGNKIDHVNCLNLIPKEISLKIVSKIKAKQNFTVYVVVPMWPEPCPYDSYVKRILYYQRRTMEMMYRDITQALNRENKTEEDLKRYLRFMIYVHSKMMIVDDKYIIIGSANMNERSMNGGRDTEIAMGAYQPVVTEHGAAATTTARGEIHGFRKSLWYEHLNVRDDRFDDPEREDCITMVNTLAQINWNMFARVSDATDLPGHLLCYPVKISANDGTVTELSGSFRFFPDIKARVLPGKSRGRLINEKV* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0871 623 SMART pld_4 463 490 IPR001736 GO:0003824
Amo01g0871 623 SMART pld_4 165 206 IPR001736 GO:0003824
Amo01g0871 623 Gene3D Endonuclease Chain A 42 285 - -
Amo01g0871 623 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 463 490 IPR001736 GO:0003824
Amo01g0871 623 PANTHER PHOSPHOLIPASE D 15 463 IPR015679 -
Amo01g0871 623 PANTHER PHOSPHOLIPASE D 461 614 IPR015679 -
Amo01g0871 623 Pfam PLD-like domain 347 506 IPR025202 -
Amo01g0871 623 Pfam Phospholipase D Active site motif 167 206 IPR001736 GO:0003824
Amo01g0871 623 SUPERFAMILY Phospholipase D/nuclease 340 549 - -
Amo01g0871 623 Pfam Phospholipase D C terminal 539 610 IPR024632 -
Amo01g0871 623 Gene3D Endonuclease Chain A 302 520 - -
Amo01g0871 623 PANTHER PHOSPHOLIPASE D ALPHA 3 15 463 - -
Amo01g0871 623 SUPERFAMILY Phospholipase D/nuclease 21 274 - -
Amo01g0871 623 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 165 206 IPR001736 GO:0003824
Amo01g0871 623 PANTHER PHOSPHOLIPASE D ALPHA 3 461 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0871 Amo-Chr1 11927923 11930526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0871 13 614 Phospholipase D Gene Family (Wang group) AT1G52570 51.529 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0871 K01115 - gmx:100794849 601.668