Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0859 ATGGCACCATTTCTGCTACATGGAGATATCAATGCAACCATTTATGAGACTCAAAAGTTCGACACCTTTTCATCGGTGCCGCTTTATGCAAGCATTTATCTGGATGAAGTAAAGATTGAAAGCAGGTGTTTAAAAGAGCCTAATAACCCTAAATTGGAAGAGTGTTTTTACATTCGATGTGCCCATATGACATCAAATATCGTAGTCAAATTGGAACGTGACAAATGGCTTTCTTCTGTTCGTGGACGAGGTGTTATTGGAGAAGCATATGTGGAAGTTGATGAGAAAATGTTAAATGGAGTTGAAGTAGACAAATGGGTTGAAATAGTTGATGCGAGTAAAAGGCCCATATCTGGGGGTCCAAAGATCCATATCAAACTACAATTTTTTGATGCTAAACGACACCAAAACTGGTCTCAAGGCATCAAATCTCCTGACTTTCCTGGAGTTCCTCGCACTTTCTTCTCCCAGCATAAGGGATGCAAGGTTACTGTTTACCAAGATGCTCATGTCTTAGATAATTTTTCTCCAAGAGTAGTGCTTGATGGAGGTAGGATTTACGAGCCTCAAAGATGCTGGGAGGATATTTTTGATGCAATCAACGAAGCAAAACACTTTATATACATCACTGGCTGGTCTCTTTACACTCAAATTTCTCTGATAAGAGATCCTAAAAGGCCAAAGCTTGGTGGAGACATAACACTCGGTGAGTTGCTCAAGAAAAAGGCAAAGGACGATGGAGTCAGGGTTGTGCTGCTTCTATGGCAAGATGGAATAATTCGAGTTCCTGGAATTGGAAACTACGTCAGAACCATGGGTACTCATGATAAAGAAACCCAAAGCTATTTCAAGGACACAAATGTCCACTGCATTTTGTGCCCACGTGATAGTGTTTATTACACTCATCACCAAAAGATTGTGGTGGTGGATGCTAAATTGTCAAATGGAGAGGACTCAGATCATCAAAGAAGAATTGTGAGTTTTATTGGAGGTATTGATCTCTGTGATGGAAGATATGATAATCAATTTCATTCTCTTTTCCAGACTTTAGCCGCTGAACACAGTAAAGATTTTTATCAACCAAGTATTTATGGATCCGCAATTGAAAAGGGTGGTCCTAGGGAGCCATGGCATGACATACACTGTAAGCTTGAAGGGCCTATTGCATGGGATGTTTACTCCACCTTTGTGCAGAGATTTCGAAAACAGGGCACAGATCAGGGCATACTTCTTTCAGAAGAAAAGCTTAAGGATTTTATCATTACACCATCTCAAGCAACGAACCCTGGTGATGATGATGACACGTGGAATGTTCAGTTGTTTAGATCCATTGATGATACAGCTGCTCTTGGTTTTCCAGAAACTGCTAAAGAAGCTTTTGAACATGGGCTTGTTAGTGGGGAGAACAAGATGATAGATCGGAGCATTCAAGACGCATACATTAATGCTATTCGGCGAGCAAAGAATTTCATCTATATTGAGAACCAATATTTCATAGGAAGTGCTTTCGGGTGGAGTGTGGATAGCATAGAATTTGATGCTGTTCATCTTATTCCAAAGGAGCTTTCACTCAAAATTGTTAGCAAGATTAAAGCTAAGGAGAAGTTCATGGTGTATATAGTGATTCCAATGTGGCCGGAGGGTGTTCCTATAAATAAGACTGGAGCTGTTCAGAAAATGCTATATTTTCAAAGGAAGACCATAGAGATGATGTACAAGGACATTGTTGAAGCACTCAAGGAAGAGAAAATTGAACAAGATCCTCGGAAATATTTGTCATTCTTCTGTCTTGGCAATCGAGAGGTGAAGAAAGATGGAGAGTATGTGCCTCCACAGAGACCAGAACAAGGTTCCGATTACCAGAAAGCCCAAGAAGCCAGACGCTTCATGATTTATTTGCATTCCAAGATGATGATAGTTGATGATGAGTACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGGAAGAGACACCGAAATTGCCATGGGAGCTTATCAACCGCACCATTTGGCKACCAGCCARGGTGGTGCAAGAGGCCAAATCCATGGCTTCCGCATGTCCCTATGGTACGAGCACCTTGGCATGCATGAAGACACCTTCCTCAACCCAGAAAGTGAAGAATGTATTAACCAAGTGAAGCAACTTGGGGACAGGTATTGGGAGTTGTATTCTAACAAGGATTCACTTGGATCTAATAACCTTCCTGGTCACTTGCTTCGGTATCCTGTTGACATTTGTGCTGATGGAACACTCACAAATCTCTCAGGATCTGAGTTCTTTCCTGACACTAATGCTCCTATTCTAGGTGACAAAAACCCTACTATTATAAATCGATTTCTTCCTAACAATACAATGGATATCCTTAAGAAGATCATCACCAGGTAG 2400 0.4096 MAPFLLHGDINATIYETQKFDTFSSVPLYASIYLDEVKIESRCLKEPNNPKLEECFYIRCAHMTSNIVVKLERDKWLSSVRGRGVIGEAYVEVDEKMLNGVEVDKWVEIVDASKRPISGGPKIHIKLQFFDAKRHQNWSQGIKSPDFPGVPRTFFSQHKGCKVTVYQDAHVLDNFSPRVVLDGGRIYEPQRCWEDIFDAINEAKHFIYITGWSLYTQISLIRDPKRPKLGGDITLGELLKKKAKDDGVRVVLLLWQDGIIRVPGIGNYVRTMGTHDKETQSYFKDTNVHCILCPRDSVYYTHHQKIVVVDAKLSNGEDSDHQRRIVSFIGGIDLCDGRYDNQFHSLFQTLAAEHSKDFYQPSIYGSAIEKGGPREPWHDIHCKLEGPIAWDVYSTFVQRFRKQGTDQGILLSEEKLKDFIITPSQATNPGDDDDTWNVQLFRSIDDTAALGFPETAKEAFEHGLVSGENKMIDRSIQDAYINAIRRAKNFIYIENQYFIGSAFGWSVDSIEFDAVHLIPKELSLKIVSKIKAKEKFMVYIVIPMWPEGVPINKTGAVQKMLYFQRKTIEMMYKDIVEALKEEKIEQDPRKYLSFFCLGNREVKKDGEYVPPQRPEQGSDYQKAQEARRFMIYLHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPHHLATSQGGARGQIHGFRMSLWYEHLGMHEDTFLNPESEECINQVKQLGDRYWELYSNKDSLGSNNLPGHLLRYPVDICADGTLTNLSGSEFFPDTNAPILGDKNPTIINRFLPNNTMDILKKIITR* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0859 799 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 130 IPR035892 -
Amo01g0859 799 Gene3D Endonuclease Chain A 183 427 - -
Amo01g0859 799 Pfam Phospholipase D Active site motif 630 656 IPR001736 GO:0003824
Amo01g0859 799 Pfam Phospholipase D Active site motif 300 338 IPR001736 GO:0003824
Amo01g0859 799 SUPERFAMILY Phospholipase D/nuclease 133 402 - -
Amo01g0859 799 SUPERFAMILY Phospholipase D/nuclease 464 714 - -
Amo01g0859 799 Pfam Phospholipase D C terminal 702 775 IPR024632 -
Amo01g0859 799 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 338 IPR001736 GO:0003824
Amo01g0859 799 PANTHER PHOSPHOLIPASE D ALPHA 3 23 779 - -
Amo01g0859 799 PANTHER PHOSPHOLIPASE D 23 779 IPR015679 -
Amo01g0859 799 PIRSF PLD_plant 5 785 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo01g0859 799 Gene3D Endonuclease Chain A 432 678 - -
Amo01g0859 799 SMART pld_4 629 656 IPR001736 GO:0003824
Amo01g0859 799 SMART pld_4 298 338 IPR001736 GO:0003824
Amo01g0859 799 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 629 656 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0859 Amo-Chr1 11783997 11788940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0859 1 777 Phospholipase D Gene Family (Wang group) AT3G15730 57.734 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0859 K01115 - sind:105158388 963.755