Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0858 ATGACTTTTTCCTTATCATTGGCCAGCCTATTTTGTATGTATGTGTTTGTATGGAGAGGAGATCCTGACAGGAAAGATGATAAGAAGCAGGCTAGCAATGGCAGCAGTTTTGCTAAACGGAACCATACAGATTCTCTATTGCTGCAAAAAGCTCTGAATTTGGCTAATTATATGATACTATCTTTAAGCACCATAATTGCTCAAAAAAACACGGGGAAACATGAAACTGGATACCATGTGGCTATTTTTGTGGGGCAAACCAAATTTGTAAGCAAAAATATAGAACAACCCAAGAATTCTAGTTGGGAAGTGAGCTTGGATTTTGTATGTTGCCTTGAAGCATCAAAAATGGTATTCATCCTGCACTGTGACGACAACTATGCAAAACCTACTGGTCAGCTACCAATTGATGCCTTTGCACAAGCATGGATACTTGCTAAGGATATCTTGGAAAAGGGTGGAACTAGGCTTCCCACAAGCTTGTTTCCACAAAGAATTGGATGCCAGGTAACTCTTTTCCAAGATGCTCATACCCCCGCTGACTTTGTCCAGAGAAAAGCCCATGCCGGACTTGGGAAATACGAGTCCCATGGATGTTGGGAGGATATGTTTGATAAATTCATTGAAGCAAAACTCTTCATATACATTGCAGCCTGGTCTCTTGACACTGAGATAACCCTCATAAGGGATCCTCCGATGAAGCCTGGAAGTGTCCCAACACTTGGTGAGCTGCTCAAGAAAAAGGCGGCAGATGGTGTAAGAGTTGTACTACTTCTTTGGAACGATATAACAGCTGTTCGGTTATTTAAAAATCAAGGGCTCATGGGTACTTGTGACAAAGAAACCGAACGGTATTTCAAAGACACTGGTGTGGAGTGTGTTCTACGTACTCATGAGAAACCGATGTGTTCTCATCACGAGAAAGTGGTGATTGTGGACGCTCCATTGACCAATAATGCGAAGAGAAGATTAGTGAGTTTTATCGGGGGTTTAGATCTCTGCAAAGGAAGATTCGACACTCCTTCACATCCACTTTTTAGCACTTTGGGGCCGGACGGTGAGCACAGCAGGGATTTTCATCAACCCAACTTTAAAGGTACTGCAATCACAAAAGGTGGCCCTAGAGAACCGTGGCATGACGTGCACTGTCGCCTTGAAGGGCCTGTTGCATGGGATGTTTATGACAACTTTGTGGAGAGCATCAAGAAGGAAGGTAAAGAGGACTTACTTGTTCCAGATAAACAGGTTACAGATGTCATGGGTGGCCGTGGCTTTCTGGAGAGCTGCAAGAAGGAAGGAAAAGAGGGCATACTTGTTCGACAGAAACAGGTTAAAGATGTCATAAGTGATGACCAACAAATAATTGAGCCTAATCGTGAGACGTGGAATGTTCAGTTGTTTAGATCTACTACTGTTGTGTTTTCAGAAGCTGCTGGGAAAAAAAAAGGTTTTTGGAATGCTTTGGTTGCTCTTGCTCGTGGGAAGAATAAGAAGACAGATCGGAGCATTCATGATGCGTGTATATATGCTATTAGAGCTGCTGAAGGCTTCATCTATATTGAGAACCAGTATTTTATAGGAAGTAGTTCTGAAAAAAATGATGCTTCACATCAAATTGCAAAGGAGCTTACACGTAAAATTGTTAGTAAGATTAAAGCCAAGGAAAGGTTTGCTGTGTATGTTGTGATTCCGATGTGGCCAGAGGGTATCCCAGAAAGTTCCTGTGTTCAGAAAATGTTAGATTTGCAGAAACGGACAATAGAAAAGATGTACAGGGACATTAGTCAAGCAATCAAGGAAGCGGGAATTGATGAAGAGCCTCAAAATTATTTGGCATTCTTCTGCCTGGGAAATCGAGAGGTGAAGAAGCATGGAGAGTATGAACCTCCGGTCAAGCCATCCAAAGGTTCCAGTTACCAGAAAGCACAAGAGGCGAGGCGCTTCATGATTTATGTACATTCTAAGCTAATGATAGGTATGTCGAAAGTTAATCTAAACTCTTACTATATTAAATCACTACTACGACTACAATATCATGCACGGAGGGACACAGAACAGGACAGCTGA 2067 0.4219 MTFSLSLASLFCMYVFVWRGDPDRKDDKKQASNGSSFAKRNHTDSLLLQKALNLANYMILSLSTIIAQKNTGKHETGYHVAIFVGQTKFVSKNIEQPKNSSWEVSLDFVCCLEASKMVFILHCDDNYAKPTGQLPIDAFAQAWILAKDILEKGGTRLPTSLFPQRIGCQVTLFQDAHTPADFVQRKAHAGLGKYESHGCWEDMFDKFIEAKLFIYIAAWSLDTEITLIRDPPMKPGSVPTLGELLKKKAADGVRVVLLLWNDITAVRLFKNQGLMGTCDKETERYFKDTGVECVLRTHEKPMCSHHEKVVIVDAPLTNNAKRRLVSFIGGLDLCKGRFDTPSHPLFSTLGPDGEHSRDFHQPNFKGTAITKGGPREPWHDVHCRLEGPVAWDVYDNFVESIKKEGKEDLLVPDKQVTDVMGGRGFLESCKKEGKEGILVRQKQVKDVISDDQQIIEPNRETWNVQLFRSTTVVFSEAAGKKKGFWNALVALARGKNKKTDRSIHDACIYAIRAAEGFIYIENQYFIGSSSEKNDASHQIAKELTRKIVSKIKAKERFAVYVVIPMWPEGIPESSCVQKMLDLQKRTIEKMYRDISQAIKEAGIDEEPQNYLAFFCLGNREVKKHGEYEPPVKPSKGSSYQKAQEARRFMIYVHSKLMIGMSKVNLNSYYIKSLLRLQYHARRDTEQDS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0858 688 PANTHER PHOSPHOLIPASE D ALPHA 3 151 419 - -
Amo01g0858 688 PANTHER PHOSPHOLIPASE D ALPHA 3 429 658 - -
Amo01g0858 688 Pfam Phospholipase D Active site motif 304 337 IPR001736 GO:0003824
Amo01g0858 688 Gene3D Endonuclease Chain A 473 658 - -
Amo01g0858 688 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 305 337 IPR001736 GO:0003824
Amo01g0858 688 Gene3D Endonuclease Chain A 178 418 - -
Amo01g0858 688 SUPERFAMILY Phospholipase D/nuclease 500 658 - -
Amo01g0858 688 SUPERFAMILY Phospholipase D/nuclease 156 410 - -
Amo01g0858 688 PANTHER PHOSPHOLIPASE D 151 419 IPR015679 -
Amo01g0858 688 PANTHER PHOSPHOLIPASE D 429 658 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0858 Amo-Chr1 11770646 11773584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0858 62 658 Phospholipase D Gene Family (Wang group) AT1G52570 43.935 1.16e-173 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0858 K01115 - pop:18096711 507.294