Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0814 ATGGCGTCGTCCGAAGGTTTCACTGACAAGAACACGGTGTTCAGAAAACTCAAGGCCAAGTCTGAAAACAAGATGTGTTTCGATTGCAATGCGAAGAATCCAACATGGGCGTCGGTTACGTATGGCGTCTTCATATGCATCGATTGCTCCGCTGTTCATCGCAGCCTCGGAGTGCATATCAGCTTCGTGAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAACAGCATGGCTGGAATGAGGATGGCAAAATAGAAGCGAAATATACATCCAGAGCTGCAGATATGTATAGGAAACTTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGGAGTTGCATCATCATCACCTGTTGCTTCTCAGTCTTCTCAAGGGGCTAATGGACTTAGCGAAGTCCAGACCAGTGGAGCACCAAAAGAAAACACATCAGATAAACCAGAAAAGCCTGAGAGCACTTCTTCACCCCGTGCTTCACATACACATACAGTAGTGTCAAGTGTGGTCAAGAAGCCCATTGGTGCCAAAAAAACTGGGAAAGCTGGAGGACTTGGTGCTCGTAAGCTCACTAAAAAGCCAAGTGAATCTCTCTATGAACAGAAGCCGGAAGAACCACCTGCTCCAGTTCCATTGGCAACAAACAATAATGTGCTCGCTCCATCTATAACTTCCCGATTTGAGTATGTTGAAAATGTCCAATCGTCTGAGGTAAACTCTGGAGGTTCTCAGGTAATTGGTCATGTTGCTCCGCCAAAGTCATCAAGCTTTTTTTCTGACTTCGGAATGGATAGTGGCTTTTCAAAGAAATCTGGCCCTAGCTCCTCAAAAGTGCAAATTGAGGAAACAGATGAAGCCAGAAAGAAGTTCTCGAATGCAAAATCCATTTCCTCATCCCAATTTTTTGGAGATCAGAACAGTGCTGCTGATGTGGATGCTAAGGTTACTTTGTCAAAGTTTTCGGGTTCAAGTGCCATCTCTAGTGCTGATCTTTTTGGTGAGTCGAGAGCCAATTCTGGAGCTGATGTTTCTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGCGCAGCAAGATATCTCATCGCTTAAAAACATTGCCGGAGAGACCGGGAAGAAGCTCACCTCACTGGCATCCAATTTGATGTCAGATCTTCAAGATCGAATCCTTTAA 1224 0.4436 MASSEGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGVFICIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWNEDGKIEAKYTSRAADMYRKLLSKEVAKSMAEEGVASSSPVASQSSQGANGLSEVQTSGAPKENTSDKPEKPESTSSPRASHTHTVVSSVVKKPIGAKKTGKAGGLGARKLTKKPSESLYEQKPEEPPAPVPLATNNNVLAPSITSRFEYVENVQSSEVNSGGSQVIGHVAPPKSSSFFSDFGMDSGFSKKSGPSSSKVQIEETDEARKKFSNAKSISSSQFFGDQNSAADVDAKVTLSKFSGSSAISSADLFGESRANSGADVSASDLINRLSFQAQQDISSLKNIAGETGKKLTSLASNLMSDLQDRIL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0814 407 Pfam Putative GTPase activating protein for Arf 12 115 IPR001164 GO:0005096
Amo01g0814 407 MobiDBLite consensus disorder prediction 132 159 - -
Amo01g0814 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Amo01g0814 407 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
Amo01g0814 407 MobiDBLite consensus disorder prediction 132 232 - -
Amo01g0814 407 Gene3D Arf GTPase activating protein 2 142 IPR038508 -
Amo01g0814 407 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Amo01g0814 407 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Amo01g0814 407 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Amo01g0814 407 CDD ArfGap_ArfGap2_3_like 9 124 - -
Amo01g0814 407 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Amo01g0814 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 407 - -
Amo01g0814 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0814 Amo-Chr1 11268146 11272721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0814 14 92 C2H2 Transcription Factor Family AT4G21160 48.750 3.26e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0814 K12493 K11855 gmx:100785169 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0076 05 849107 854195 Amo01g0814 01 11268146 11272721 PCT
Amo01g0814 01 11268146 11272721 Amo05g0076 05 849107 854195 PCT