Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0812 ATGACGGATTACCGGTCGACGCCAACGATGAATCTCTGGAACGATGAAAACTCCTCCGTCATGGAAGCCTTCATGAGCTCCTCCGACCTCTCCTCTCTCTGGCTCCCTCCGCCACAATCCGCCGCCTCCACCTCCACCTCCGCAGCACCACCACCACAGCAACAACAACCACCTCCTCCACCGCCGTTCAACCAGGAAACCCTTCAGCACCGACTCCAAGCCCTAATCGAAGGCGCAAGAGAGAGCTGGACCTACGCAATCTTCTGGCAGTGCTCCTACGACTACTCCAATGGCCTCACACTCTTAGGTTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCATAAAAGCGACGTCGTTTGAGCAGCAGCAACACCGTAAGAAGGTCCTTAGAGAATTAAACTCTTTAATTTCAGGTCCTTCAGCTTCTGGCGACGAAGCGGTAGACGAAGAAGTAACCGACACCGAATGGTTCTTTCTTATATCCATGACTCAGCATTTCGTAAGCGGAACAGGCCTTCCTGGTCAGGCTTTCTTTAATTCGAATCCGGTTTGGGTTGCCGGTCCTGAACGGTTATTAGGCTCGGGCTGTGACCGGGCCCGGCAAGGTCAGTCGTTTGGGATACAGACCATAGTTTGTATACCTTCAGCAAACGGCGTGGTTGAGTTGGGTTCCACGGAACTCATTTATCAGAACCCGGATCTGATGAGTAAGGTGAAGGTGTTGTTCAATTTTAGTAACAGTAGTGGTGACGTGGCTGGATCCTGGCCCTTGAGTTCTGCAGATCAAGGAGAGAACGATCCTTCTTCGTTGTGGCTCAACGACCCTTCTTCTTCGGCTGGTGGGATCGAAATTCGAGATTCTGTTAATACGGCTGCGACTACGACGGTTGCCAACAACAAAACGGTGCCGGTTGTATCCAATCCTGGCTCCTCCAGCGTGGTAACTGAAGCTCCGAAGAATCCGCAACAGAATCAAGGGTTTGTGCTGAAGGAATTGAATTTCTCGAGCTCGTTAAAGCCGGAATCTGGCGAGATTCTGAGTTTTGGAGAGAATAAGAAGGGTTCTTATGGTGTAAACAGTAATAACGGTGGAAACAATTTGTTCTCTGTTCAGTCTCAGTCGCAGTTTGTCTCCGATGAGAACAAGAAGAGGAGATCCCCTACTTCTCGGAGCAGCATTGAGGATGGAATACTGTCTTTTACTTCCGGCGTGATCTTGCCGGCTTCGAATGCGAAGTCCGGTGGCGGCGGAGGCGGAGATTCGGATCATTCGGATTTGGAAGCTTCTGTGGTGAAGGAGGCCGTTGAGCCGGAGAAGAGGCCGCGAAAGAGAGGGAGGAAGCCGGCAAACGGAAGGGAGGAGCCGCTCAATCATGTGGAGGCAGAGAGGCAGAGAAGGGAGAAGCTCAATCAGAGGTTTTATGCTCTTCGAGCCGTGGTTCCCAATGTGTCGAAGATGGACAAGGCTTCGCTGTTGGGAGATGCTATCTCATACATCAACGAATTGAAATCGAAGCTACAAGGGCTGGAATCGGAGAAAGGCGAATTGAGCAAGCAATTGGAAGATTCCAAGAAGGAGCTGGAGCTGGCTAGTAAGAATTCAGGGGCTGCACAGGCCGCCCCACCGCCTCTTCCTGCGCCACCGGATAAGGAACAAAGGAGTCGTGCTGGAGTAAATGGGAAATTGATTGATTTGGAGATTGAGGTGAAGATTATTGGTTGGGACGCCATGATTAGGATCCAATGTAGCAAGAAGAACCACCCCGCAGCGAGGCTGATGGCGGCGCTGAAGGACCTGGACTTGGAAGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATTCAGCAGGCTACGGTGAACATGGGAAGCCGGTTTTACACACAGGAGCAGCTCATGTTAGCGCTATCATCCAAAGTTGGCGGCGGCGGAGATGCTAAGTAG 1962 0.5163 MTDYRSTPTMNLWNDENSSVMEAFMSSSDLSSLWLPPPQSAASTSTSAAPPPQQQQPPPPPPFNQETLQHRLQALIEGARESWTYAIFWQCSYDYSNGLTLLGWGDGYYKGEEDKGKAIKATSFEQQQHRKKVLRELNSLISGPSASGDEAVDEEVTDTEWFFLISMTQHFVSGTGLPGQAFFNSNPVWVAGPERLLGSGCDRARQGQSFGIQTIVCIPSANGVVELGSTELIYQNPDLMSKVKVLFNFSNSSGDVAGSWPLSSADQGENDPSSLWLNDPSSSAGGIEIRDSVNTAATTTVANNKTVPVVSNPGSSSVVTEAPKNPQQNQGFVLKELNFSSSLKPESGEILSFGENKKGSYGVNSNNGGNNLFSVQSQSQFVSDENKKRRSPTSRSSIEDGILSFTSGVILPASNAKSGGGGGGDSDHSDLEASVVKEAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGELSKQLEDSKKELELASKNSGAAQAAPPPLPAPPDKEQRSRAGVNGKLIDLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGSRFYTQEQLMLALSSKVGGGGDAK* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0812 653 MobiDBLite consensus disorder prediction 436 468 - -
Amo01g0812 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 526 IPR036638 GO:0046983
Amo01g0812 653 MobiDBLite consensus disorder prediction 378 399 - -
Amo01g0812 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Amo01g0812 653 SMART finulus 464 513 IPR011598 GO:0046983
Amo01g0812 653 PANTHER MYC 11 646 IPR045084 GO:0003700|GO:0006355
Amo01g0812 653 MobiDBLite consensus disorder prediction 535 562 - -
Amo01g0812 653 MobiDBLite consensus disorder prediction 30 50 - -
Amo01g0812 653 CDD bHLH_AtAIB_like 455 531 - -
Amo01g0812 653 MobiDBLite consensus disorder prediction 306 327 - -
Amo01g0812 653 Gene3D - 450 538 IPR036638 GO:0046983
Amo01g0812 653 Coils Coil 504 538 - -
Amo01g0812 653 PANTHER TRANSCRIPTION FACTOR MYC2 11 646 - -
Amo01g0812 653 MobiDBLite consensus disorder prediction 51 65 - -
Amo01g0812 653 Pfam Helix-loop-helix DNA-binding domain 462 507 IPR011598 GO:0046983
Amo01g0812 653 MobiDBLite consensus disorder prediction 260 281 - -
Amo01g0812 653 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 247 IPR025610 -
Amo01g0812 653 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0812 Amo-Chr1 11240081 11242748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0812 1 647 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.250 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g0812 bHLH-MYC_N 7.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0812 K13422 - gmx:100790854 768.074