Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0791 ATGTTTCCCTTCTTGTTCGAACCCCAAAGCGACGAAGAGATCGAACACTCCGAAGAAGAAGAAGCATCCGAACCAGAATCAGAACCAGGATCCGAACCGGAAGAATCAGAAGGAGAAGAAGAAGAAGACGAACAAGAAGCTTCTAGAATCTCAAAGGAGAAGAAGAAGAAGAAAACACAGTCTCCGTGGGACTTCGCCAAGTACACTGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTTGACGAAAAAATCTCCAAAGCATTAAAACAGCGCTCAACACCTCTCGCGGTTCCTTCGCAAAACAACGACGTTGACGACTCATCAGATTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGCGGGTGATAGCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCGGATTCGTTCTTGCAGCTTCATTTGTCACGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCTTGTATACCATTGGCGTTAAATGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTGTTGTTCCGTCCTAAACGCATGCATGCAATAAGGGTCCTTATTCTTACACCAACCAGAGAGTTAGCAGTACAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGATATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCAACGAAGGTGCAAGAAGCTGCTTTGAGATCAATGCCAGACATTGTCGTTGCTACCCCAGGACGTATGATAGACCATTTACGTAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTGCTAATCCTTGATGAGGCGGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGCTATTTTCAGCAACAATGACTGAGGAGGTTGATGACCTTATTAAATTGTCCCTAACAAAACCTGTGCGTCTTTCTGCTGATCCATCTGCTAAACGGCCTGCAGCCTTGACTGAGGACACAGTTTTATATTTGAGTGGAGAATGGAGACCCTTAAATCCTGTTAACTGTTGTTTTTCTTTTTCAGGGTGGTTAGGATACGAAGATTGCGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTTATCATCTTCAGTATTCATATCAATGGAGAAGGCTGCTCTAAATGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTTTTGATTGCAACTGATGTGGCTGCCGGCCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCTCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGCCGAGAAGGATGCGCCGTCACATTTGTGACTGATAACGACCGGTCACTTCTAAAAGCAATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGAATTGTAGCAGAACAATCCATACATAAATGGTCTCATATAATTGAGCAATTGGAGGATCAAATTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACTTGATTGCTCATAAGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTAACAGAGACAGAAAAGAAGGTTGCTGCAAAAGCAGCAAAGGAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCGAGAAAGAAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGACAAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTCGCTTATCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAATGGATTCAGGCAAGATCGTGAAGAAGAACAAAAAGAATACCAATCGTCCTTCACATAAGTCGTCTTCAAGGACACAGGAGATGCAGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCTGGAGCAGGAAAGAAATCTAAGAGTTCGTTCAAGAGCAAGTCAAGGTACAAGCGCAGGTAG 2319 0.445 MFPFLFEPQSDEEIEHSEEEEASEPESEPGSEPEESEGEEEEDEQEASRISKEKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLAVPSQNNDVDDSSDSEPDKQEDYRPDEEDEEEGNAGDSKSFFAPSDGASFHADSFLQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDDLIKLSLTKPVRLSADPSAKRPAALTEDTVLYLSGEWRPLNPVNCCFSFSGWLGYEDCVKQIRKQFFLQCAPKLLLLKLSSSVFISMEKAALNGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAAGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQLEDQIAEVLEEEREERALRKAEMEATKAENLIAHKEEIFSRPKRTWFVTETEKKVAAKAAKEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDDKPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKNTNRPSHKSSSRTQEMQELFQADMKDKKPKRRGAGAGKKSKSSFKSKSRYKRR* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0791 772 PANTHER RNA HELICASE 59 283 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 698 716 - -
Amo01g0791 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Amo01g0791 772 PANTHER BNAA01G17110D PROTEIN 59 283 - -
Amo01g0791 772 PANTHER BNAA01G17110D PROTEIN 308 374 - -
Amo01g0791 772 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Amo01g0791 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 357 IPR027417 -
Amo01g0791 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Amo01g0791 772 SMART helicmild6 440 524 IPR001650 -
Amo01g0791 772 Pfam Helicase conserved C-terminal domain 446 524 IPR001650 -
Amo01g0791 772 Gene3D - 115 359 IPR027417 -
Amo01g0791 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 564 IPR027417 -
Amo01g0791 772 CDD DEADc_DDX27 163 358 - -
Amo01g0791 772 PANTHER BNAA01G17110D PROTEIN 436 729 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 750 772 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 632 646 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 45 92 - -
Amo01g0791 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 563 IPR001650 -
Amo01g0791 772 Coils Coil 627 651 - -
Amo01g0791 772 SMART ultradead3 171 372 IPR014001 -
Amo01g0791 772 CDD SF2_C_DEAD 439 533 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 1 142 - -
Amo01g0791 772 Coils Coil 562 609 - -
Amo01g0791 772 MobiDBLite consensus disorder prediction 12 44 - -
Amo01g0791 772 Gene3D - 437 659 IPR027417 -
Amo01g0791 772 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Amo01g0791 772 MobiDBLite consensus disorder prediction 632 772 - -
Amo01g0791 772 PANTHER RNA HELICASE 308 374 - -
Amo01g0791 772 PANTHER RNA HELICASE 436 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0791 Amo-Chr1 10979464 10985618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0791 136 552 Eukaryotic Initiation Factors Gene Family AT3G19760 27.990 7.49e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0791 K13181 - gmx:100791233 947.577