Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0755 ATGAACGACATTAACAACTACTCCTCCTTCGCAGCCGATTCAGGTTCTCTGGACTCAAATCATTCATGCTTGATGGTTGCGGTTGGAAGTGTCGGTGTTGAGTTTGCACCTTCGTCGTCTTCATCATCATCATCATCTCTTACTCGGTGCCGTAAACCTAGAAAGAAGAGCGCTAAACTGATAAGCATAATGGAAGAAGAAGGAGTGGAAGGTAACAAGAAGCGAGACTCGGAGGAGGCGCCAAAGATCACGCGTCCATGCACTCAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTCTATGGCCACATGCGGTGCCACCCTGAGCGGCCGTGGCGAGGCATAAATCCTCCTCGGAACCTCATCCCACCACCACTAGTACACGAAGACACGAGCGGCGTCACCCTGGAGGATCACGAGGTTGCCACGTGTCTCCTGCTGCTAGCGAACAGTGGGAGGGAGACGGTTAAAAATGATGAGCCTAATGAAGTGAAGATAGTGGAATGTGGAGATTCTTATCATTACAAAGAATTTGAGTGCTCCAGTTGCAAGAGAGTGTTTGGATCTCATCAAGCACTGGGAGGGCACAGAGCAAGTCACAAGAACGTCAAGGGATGCTTTGCCATTACTCGGACCACCACCGAGGATCATCTACTAAACATTAACCTCCTCGCGCATGCTGACCACGGCGACGGCGACGGCATCGCCAGCCACCAGTGTAGCATATGCCTCAGGGTGTTCCCCAGTGGCCAGGCTCTTGGTGGACACAAGAGGTGTCATTGGGAGAAAGCTGAGATTGATGAGACTGATGGGTCAACGTCAACACTACTCCCTGTTGACCTCAATTTGCCTGCTCCTATTGATCAACACTACTACCATTGCTCTTCTTCAACACTCACTCTGGATTTGAGGTTGGGTCTTTAA 924 0.5065 MNDINNYSSFAADSGSLDSNHSCLMVAVGSVGVEFAPSSSSSSSSSLTRCRKPRKKSAKLISIMEEEGVEGNKKRDSEEAPKITRPCTQCGKKFWSWKALYGHMRCHPERPWRGINPPRNLIPPPLVHEDTSGVTLEDHEVATCLLLLANSGRETVKNDEPNEVKIVECGDSYHYKEFECSSCKRVFGSHQALGGHRASHKNVKGCFAITRTTTEDHLLNINLLAHADHGDGDGIASHQCSICLRVFPSGQALGGHKRCHWEKAEIDETDGSTSTLLPVDLNLPAPIDQHYYHCSSSTLTLDLRLGL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0755 307 MobiDBLite consensus disorder prediction 36 57 - -
Amo01g0755 307 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Amo01g0755 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Amo01g0755 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Amo01g0755 307 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Amo01g0755 307 SUPERFAMILY beta-beta-alpha zinc fingers 86 200 IPR036236 -
Amo01g0755 307 SMART c2h2final6 178 200 IPR013087 -
Amo01g0755 307 SMART c2h2final6 238 260 IPR013087 -
Amo01g0755 307 SMART c2h2final6 85 107 IPR013087 -
Amo01g0755 307 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 307 - -
Amo01g0755 307 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Amo01g0755 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Amo01g0755 307 Gene3D Classic Zinc Finger 175 260 - -
Amo01g0755 307 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 307 - -
Amo01g0755 307 Gene3D Classic Zinc Finger 34 114 - -
Amo01g0755 307 Pfam C2H2-type zinc finger 86 109 - -
Amo01g0755 307 Pfam C2H2-type zinc finger 238 262 - -
Amo01g0755 307 Pfam C2H2-type zinc finger 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0755 Amo-Chr1 10529858 10530781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0755 33 307 C2H2 Transcription Factor Family AT4G35280 46.048 1.58e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g0755 zf-C2H2_6 5.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0755 - - aip:107643999 596.275