Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0749 ATGGAAACTGAAAAAACTGATATTTCAAAGGCTGAAGAATTCAAACAACTTGCCAATGAAGCATTCAATGCACGGAAATATGCCCAAGCCATTGATTTATATACACAAGCAATTGAGCTAAACAGTCGCAATGCAGTTTACTGGGCTAATCGTGCCTTTGCTCATCTTCGGCTTGAAGAGTATGGTAGTGCTATACAAGATGCTACAATGGCTATTGAAGTTGATCCCAAATATTCGAAGGGTTATTACAGAAGAGGTGCTGCTCATCTTGGGCTAGGAAAATTCAAGGACGCACTTAAGGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCCGATGCAACAAAGAAATTGAGGGAATGTGAAAAGGCAGTTATGAAACTTAAATTTGAAGAAGCCATTGCTGCACCAGAGTCTCAAAGGCGTTCAGTAGCCGAATCTATAGATTACCATTCAATAGGAAAGGGCCACAATTATTCGGTGCCTACCGAAGTGGCCATAGCAGCAGTAACAGTAGCAGTTATGGCAGCGTTGGTGATGTTCAAGACATCAAAAGCCACAATAATAAGTGCAATTGTGATTGGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTGGCCGCAATACTGATGTTGAGGCACAGTATTCAGGAGCAAGAATAGAGGGGGATGTAGTTACCTTGGATTTTGTAAAGAAAATGATGGACGATTTCAAGAATCAGAAGTGCTTACATAAACGGTATGCTTACCAGATTGTATTGCAAACTAGAGAGTTGTTGCAAGCCTTGCCTTCTCTTGTTGATATAACAGTTCCTGATGGAAAACATTTTACCGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGACGATAATCCATATCTATTCAATGGTGACTTTGTGGATAGAGGATCTTTCTCTTTGGAAGTCATCCTCACTCTGTTTGCGTTTAAATGCATGGCGCCATCAGCAATATACCTAGCTAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAGTGACACATTTGTGGAACTATTTGCAGAAGTATTTTGCTGTTTGCCTTTGGCTCATGTGATAAATTCGAAAGTTTTTGTCGTTCATGGGGGTCTTTTTAGTGTTGATGGGGTGAAACTCTCTGACATACGAGCAATTAATCGGTTTTGTGAGCCTCCAGAAGAAGGATTGATGTGTGAATTGCTCTGGAGTGATCCACAACCCCTCCCTGGACGAGGCCCAAGTAAGCGTGGTGTAGGTCTTTCTTTTGGTGCAGATGTGACGAAAAGGTTTTTGCAAGAAAATCATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAAATTGAGCATGATGGTAAACTCATAACTGTTTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCTCCTGATTTGAAACCTAACATTGTCACATTCACAGCAGTGCCACATCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAA 1620 0.4111 METEKTDISKAEEFKQLANEAFNARKYAQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDATMAIEVDPKYSKGYYRRGAAHLGLGKFKDALKDFQQVKKMCPNDPDATKKLRECEKAVMKLKFEEAIAAPESQRRSVAESIDYHSIGKGHNYSVPTEVAIAAVTVAVMAALVMFKTSKATIISAIVIGLLLLLGAYWWSGRNTDVEAQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAYQIVLQTRELLQALPSLVDITVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSDDNPYLFNGDFVDRGSFSLEVILTLFAFKCMAPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCCLPLAHVINSKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENHLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFTAVPHPDVKPMAYANNFLRMFS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0749 539 Pfam Tetratricopeptide repeat 16 78 - -
Amo01g0749 539 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Amo01g0749 539 SMART tpr_5 11 44 IPR019734 GO:0005515
Amo01g0749 539 SMART tpr_5 79 112 IPR019734 GO:0005515
Amo01g0749 539 SMART tpr_5 45 78 IPR019734 GO:0005515
Amo01g0749 539 CDD MPP_PP5_C 217 532 IPR041753 -
Amo01g0749 539 Pfam Calcineurin-like phosphoesterase 277 471 IPR004843 GO:0016787
Amo01g0749 539 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 212 538 - -
Amo01g0749 539 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 10 186 - -
Amo01g0749 539 Gene3D - 205 538 IPR029052 -
Amo01g0749 539 Coils Coil 535 539 - -
Amo01g0749 539 SUPERFAMILY Metallo-dependent phosphatases 226 533 IPR029052 -
Amo01g0749 539 Pfam PPP5 TPR repeat region 210 269 IPR013235 -
Amo01g0749 539 PANTHER BNAC09G39960D PROTEIN 212 538 - -
Amo01g0749 539 PANTHER BNAC09G39960D PROTEIN 10 186 - -
Amo01g0749 539 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Amo01g0749 539 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Amo01g0749 539 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Amo01g0749 539 SUPERFAMILY TPR-like 6 137 IPR011990 GO:0005515
Amo01g0749 539 Gene3D Tetratricopeptide repeat domain 2 164 IPR011990 GO:0005515
Amo01g0749 539 PIRSF PPPtase_5 1 539 - -
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 307 334 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 340 364 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 404 431 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 374 400 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 277 304 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 460 480 IPR006186 GO:0016787
Amo01g0749 539 PRINTS Serine/threonine phosphatase family signature 482 498 IPR006186 GO:0016787
Amo01g0749 539 SMART pp2a_7 245 521 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0749 Amo-Chr1 10466996 10474009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0749 252 466 Calmodulin-binding Proteins AT5G63870 34.400 8.64e-39 142