Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0733 ATGGAGACACATTATAGGGATTCTTTGTCCTCCCATGGTGTTGCAGGCTCATTTAAGACTTCTTCACTTAATGTTCCGAAAAAGGTGGAAAGCAGTGCTTGGGGAATACCGCACAAGAGTAATGTATTTCATGCTTCTAATGATGTTAGCTTGTTTTCCAGCTCACTACCTGTTCTTCCACATGAGAAGTTAAATTTGACTGATTCTGAACGTTATGGCCAACCTATTGATGATAACTTGCTAACAATAGATAAAGTGGACAAAGAGAACGAGGAAAATGATCCTTTTGAAGATTTTGAAGCCAATATAGTCGGAAACATACTTCCTGATGAAGAGGAGCTTTTAGCTGGGATAATGGACGATTTCGACCTTAGTAGGTTGCCAAGCCAAGTGGAGGATTTGGATGATAATGATCTGTTTGGCAGTGGAGGGGGGTTCGAAATGGACTTTGAACCCCAAGAGAGTCTTAATGTTGGCATGTCAAAGCTAAGCATTTCAGATGGAGTTGCTTCAAATGGTATTGGTCATTATTCAATCCCAAATGGTATGGGAACGGTGGCTGGTGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTACGGACCTTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGACATTCGAGATGCTCGCATTGCAATGCGTGCCTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAATCCCTCAGAGAAAGATATTAATCAAGGAACCCTTGTAGCATTCAATTTGGATCCTTCAGTGTCAAATGAGGACCTTCGATTAATCTTTGGTGCTTATGGAGAGGTCAAGGAGATTAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAGTTTTATGATGTTAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGGGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGCGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAGTTGGAGCAAGATGAAGCTCGAACTTTTCGACATCAAGTAGGTTCACCTGTGGCCAATTCTCCTCCCGGTAACTGGGCACATTTTGGTAGTCCAGTTGAGCATAATCAACTAGGTTCGTTTAGCAAGTCGCCTGGTTTGGGCCATACCAGCCCTATCAATACTAACCATTTTTCTGGATTGGCTGCAATTCTTTCCCCACATGCATCTAACAAGATTGCGCCGATTGGTAAGGACCCCGGAAGGGCTGCAAATCAGATATTTGTGAACTCTGGATCAATGCAAGGAACAGCTTTCCAGCATTCCATGTCTTTCCCTGAGCAAAAAGTGAATGCAAGTCCTAGGCCTATATCTTCCTTTGGCGAATCAAGTTCAAGCTCATCCAGTATTGGAACATTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCCTTATACTGAGCATTCAACCACATCTGGTTGGTCTTCGTCTTCTTTGGGGCATCCATTTACTTCTAGTGGCCAAAGGCAGGGTTTTCCATATTCAAGTCATCGCAGTTCTTTTCTTGGTTCCCAGCCCCATCATCATATAGGATCTGCTCCATCTGGCCTTCATTTTGATAGGCATTTTAACTACTTCCCAGAATCACCCGATGCTTCTTTAATGAGCCCAGTTGGATTTGGGAATTTAAATCTCAGTGACAGGAGTTTTATGATGAACAGGAGCAGTCATGCATCTTTAGGTGGTTCTGCTGGCCTTTCAGGAAATACTGCTGAAAATGGTTCACCTAATTTCGGGATGCTGTCACTGCCTAGGCATGGTTCTTTGCTTCTCGGAAGCAGTTCTTATTCTGGACCCGGAGCAACTAACACTGAAGGCTTGTCTCGAAGTAGGCGACCCGAGAATAGTGGAAACCCAATTGATTCAAAGAAGCTGTACCAACTTGATCTTGATAAAATCCTCAGTGGTGAAGATACAAGGACGACTTTAATGATTAAAAATATTCCTAACAAGTACACATCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTGCTTATGACTTTCTCTACTTGCCAATTGATTTTAAGAACAAGTGTAATGTGGGTTATGCCTTTATCAATATGGTGTCTCCTTCACACATCATTCCATTCTATGAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGCGAAAAAGTTGCCTCACTGGCATATGCAAGGATACAAGGAAAGTCTGCACTTGTGACACATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTCGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGACGAATGATCAGGAGAATTTTCTGTCCAGCAATTTGAATATATGTATTCGTCAACCAGACGGGTCTTACTCAGGTGATTTATTGGAGAGTCCAAAGGGCGATTGGGACGAGAAACTAGAAAAAGATTAA 2553 0.4234 METHYRDSLSSHGVAGSFKTSSLNVPKKVESSAWGIPHKSNVFHASNDVSLFSSSLPVLPHEKLNLTDSERYGQPIDDNLLTIDKVDKENEENDPFEDFEANIVGNILPDEEELLAGIMDDFDLSRLPSQVEDLDDNDLFGSGGGFEMDFEPQESLNVGMSKLSISDGVASNGIGHYSIPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRDARIAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVAFNLDPSVSNEDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGNWAHFGSPVEHNQLGSFSKSPGLGHTSPINTNHFSGLAAILSPHASNKIAPIGKDPGRAANQIFVNSGSMQGTAFQHSMSFPEQKVNASPRPISSFGESSSSSSSIGTLSGPQFLWGSPTPYTEHSTTSGWSSSSLGHPFTSSGQRQGFPYSSHRSSFLGSQPHHHIGSAPSGLHFDRHFNYFPESPDASLMSPVGFGNLNLSDRSFMMNRSSHASLGGSAGLSGNTAENGSPNFGMLSLPRHGSLLLGSSSYSGPGATNTEGLSRSRRPENSGNPIDSKKLYQLDLDKILSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGAYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKSALVTHFQNSSLMNEDKRCRPILFHSEGQETNDQENFLSSNLNICIRQPDGSYSGDLLESPKGDWDEKLEKD* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0733 850 MobiDBLite consensus disorder prediction 472 499 - -
Amo01g0733 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Amo01g0733 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Amo01g0733 850 SUPERFAMILY RNA-binding domain, RBD 692 776 IPR035979 GO:0003676
Amo01g0733 850 Gene3D - 282 380 IPR012677 -
Amo01g0733 850 CDD RRM3_MEI2_like 693 778 IPR034454 -
Amo01g0733 850 MobiDBLite consensus disorder prediction 644 672 - -
Amo01g0733 850 MobiDBLite consensus disorder prediction 830 850 - -
Amo01g0733 850 MobiDBLite consensus disorder prediction 519 556 - -
Amo01g0733 850 MobiDBLite consensus disorder prediction 644 665 - -
Amo01g0733 850 CDD RRM2_MEI2_like 282 352 - -
Amo01g0733 850 SMART rrm1_1 284 352 IPR000504 GO:0003723
Amo01g0733 850 SMART rrm1_1 199 267 IPR000504 GO:0003723
Amo01g0733 850 SMART rrm1_1 692 768 IPR000504 GO:0003723
Amo01g0733 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 10 846 - -
Amo01g0733 850 MobiDBLite consensus disorder prediction 519 564 - -
Amo01g0733 850 Pfam RNA recognition motif 2 690 786 IPR007201 -
Amo01g0733 850 Gene3D - 186 281 IPR012677 -
Amo01g0733 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Amo01g0733 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 350 IPR000504 GO:0003723
Amo01g0733 850 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Amo01g0733 850 CDD RRM1_MEI2_like 197 273 IPR034453 -
Amo01g0733 850 PANTHER PROTEIN MEI2-LIKE 2 10 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0733 Amo-Chr1 10301637 10309752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0733 138 391 Eukaryotic Initiation Factors Gene Family AT1G71770 24.211 4.88e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0733 - - gmx:100814765 1371.68