LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g0728	ATGACGATGACAATTGTACCCTCCCTTCACTTCTTGCTCCCTCAGAACCCAAAACCCTTCCAAATCCCTAATTTTATCCTGAAAACCCACTACGCCCCTTTTAATTTCAGACCCCAATTTTCCCGGGAAACAAACACCCCTCCTTCCCCCACCGACCGCGGACTCATTTTCCAGGAAAAAGTTCAGTACCTCAAGAATCTCAAAGTGAACCCACAGAAAGCCTTCCAAGTAAACCCTAACCTCCGATCCACACCACTTTCCACCGTCAAATCCGTCGAGCAATGCCTCTCTTCCATGGGAATCCACCGCTCCGCCATGGGAAGAATCCTCGATATGCTCCCGGAGCTTCTCAACCGAGACCCCGCCACGGACCTCTATCCGATCCTCGATTTCCTCCTCAACGACGTCGGAATCCCTTACCCCGACGTTCACAAATCGATCTCGCGGTGCCCTAGGCTCTTGATCTGCAGCGTGGAGGAGCAATTGAAGCCAACCCTAAAATTCCTGATGAAATTAGGGTTCACCGGTTCGAATTCCCTAACGTGCCAGAACACTGTGCTACTTGTTTCGAGCGTGGAGGGAACGCTCATTCCGAAGATCGAGTTCTTGAAAAGCTTGGGGCTTTCGGAATCAGAGGTTAATTGCATGGTTGTGAGGTCCCCTGCTTTGTTAACCTACAGTGTAGAGAAGAATTTGAAGCCTAAAGTTGAGTACTTTTTGAATGAGATGAATGGAAACGTTTCAGAGTTGAATCGGTTTCCGCAGTATTTTTCATTTAGCTTGGAAGGGAGGATTAAGCCAAGGCATAAGGTGTTGGTTGAGAATAGGGTGAAACTACCTTTGCATCTTATGTTGAAGGGTGATGATGGTGTTTTCTATGAGACACTGATTAATACCAGGTTAAGAAAGCTTGATGGAAGCATGGTTTCTCATCAAAATGGTGGTGGATGGGGAGTGGATCGGCATGGCTTCATCGGACATAATTTTCGAAAAAATGTTGGAAATGCAACAAAAATAAGAGGACTGCATGTTATTTGA	1038	0.4663	MTMTIVPSLHFLLPQNPKPFQIPNFILKTHYAPFNFRPQFSRETNTPPSPTDRGLIFQEKVQYLKNLKVNPQKAFQVNPNLRSTPLSTVKSVEQCLSSMGIHRSAMGRILDMLPELLNRDPATDLYPILDFLLNDVGIPYPDVHKSISRCPRLLICSVEEQLKPTLKFLMKLGFTGSNSLTCQNTVLLVSSVEGTLIPKIEFLKSLGLSESEVNCMVVRSPALLTYSVEKNLKPKVEYFLNEMNGNVSELNRFPQYFSFSLEGRIKPRHKVLVENRVKLPLHLMLKGDDGVFYETLINTRLRKLDGSMVSHQNGGGWGVDRHGFIGHNFRKNVGNATKIRGLHVI*	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g0728	345	PANTHER	CGI-12 PROTEIN-RELATED	41	305	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	SMART	mt_12	247	278	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	SMART	mt_12	144	175	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	SMART	mt_12	214	246	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	SMART	mt_12	178	209	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	SMART	mt_12	107	139	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	Pfam	mTERF	133	292	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	Pfam	mTERF	57	171	IPR003690	GO:0003690\|GO:0006355
	Amo01g0728	345	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	41	305	-	-
	Amo01g0728	345	Gene3D	Transcription termination factor 3, mitochondrial	57	305	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g0728	Amo-Chr1	10282571	10283802	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Amo01g0728		mTERF	1.8e-34	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g0728	K15032		-	vvi:100247222	344.354