Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0705 ATGTCTGGCAACCATTCTTTAAAGGTTGAATTGTCGAAGACGACGGCATTATTGGGTTTGAGGCTGTGGGTTTTGATTGGGATAGGTGTTGGTGCATTCATAGTTCTAATTCTTTGTGTATTACCCGTATGGGTGACATTTCGGAGAAAGTCGAGGAGATCTCTGGACAAGATCCCCATGTCTCAAATTCCAAATGTCTCGAAAGATATCAAGGTTGACAAGGTTGGGGTGCTGAATTGTCATGATCAAGCTGAGAGTGTATATATTCCTGTTCATGACAAGGCAAGTGATAATAATAATTCAGAAAAGTTGTTAGTTCATTTGGGAATGAGCAAATCCAGTGATGCAGATAATATCAGCCAATGCAGCTCGATTTTTCATCACGAGAGAGGGTTTAGTTCGATGTCCGGTGAAGAAGGAAGCTCCAGCACATTTAAGAAGAAGTCTGCATTGGGGATGGTAACTGCATCACCTCTAATTGGTTTGCCCGAGGTTTCTCATCTTGGATGGGGCCACTGGTTCACCCTTAGAGATCTTGAACTTGCAACCAATCGTTTCTCGGCTGAGAATGTGATTGGTGAGGGTGGATATGGAGTTGTTTACAGGGGAAGGCTAATCAATGGGTCTGAGGTGGCAGTGAAGAGACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAAGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGGTTGCTTGGATATTGCATAGAAGGAGTACACAGGTTGTTAGTGTATGAATATGTGAACAATGGTAATTTAGAACAATGGTTACATGGAGCTATGAGTCAACATGGAATACTTACCTGGGAAGCTCGTATGAAGGTTATACTCGGCACAGCCAAAGCGCTTGCTTATTTACACGAAGCAATCGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATAGTGAGTTCAATGCGAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGACTCCGGGGAAAGTCACATAACTACTAGAGTAATGGGAACATTCGGTTATGTGGCACCAGAATATGCTAATACTGGCATGTTAAATGAAAGAAGCGACATTTACAGCTTCGGTGTTGTCTTGCTAGAAGTGGTTACCGGAAGGGACCCGGTTGACTATTCCCGTTCCGCGAATGAGGTGAATCTTGTTGAGTGGCTCAAGATCATGGTGGGAACAAGGAGGGCCGAGGAAGTTGTGGACTCTAGCCTCGAAGTGAAACCATCGATGCGTGTCCTAAAGCGTGCCCTTCTGGTCGCACTTAGGTGTGTCGATCCTGATGCCGACAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCAGACGAGTATCCGTTCCGACAGGATCGAAGAACTAGAAAGAGCCGCACCGGCAGCATGGAAATCGAATCTGTGAAGGATAATTCCGGTCCATCGGATGCCGAAATGGTGAAGGGTCCTGAAAGCAATGTGCTTGAGACATCCCAACAATAG 1527 0.446 MSGNHSLKVELSKTTALLGLRLWVLIGIGVGAFIVLILCVLPVWVTFRRKSRRSLDKIPMSQIPNVSKDIKVDKVGVLNCHDQAESVYIPVHDKASDNNNSEKLLVHLGMSKSSDADNISQCSSIFHHERGFSSMSGEEGSSSTFKKKSALGMVTASPLIGLPEVSHLGWGHWFTLRDLELATNRFSAENVIGEGGYGVVYRGRLINGSEVAVKRLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGILTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNERSDIYSFGVVLLEVVTGRDPVDYSRSANEVNLVEWLKIMVGTRRAEEVVDSSLEVKPSMRVLKRALLVALRCVDPDADKRPKMSQVVRMLEADEYPFRQDRRTRKSRTGSMEIESVKDNSGPSDAEMVKGPESNVLETSQQ* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0705 508 CDD STKc_IRAK 192 458 - -
Amo01g0705 508 SUPERFAMILY Protein kinase-like (PK-like) 170 462 IPR011009 -
Amo01g0705 508 PANTHER OS01G0323000 PROTEIN 2 504 - -
Amo01g0705 508 Pfam Protein kinase domain 188 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0705 508 Gene3D Phosphorylase Kinase; domain 1 166 261 - -
Amo01g0705 508 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524
Amo01g0705 508 MobiDBLite consensus disorder prediction 464 479 - -
Amo01g0705 508 ProSiteProfiles Protein kinase domain profile. 186 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0705 508 SMART serkin_6 186 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0705 508 PANTHER RECEPTOR-LIKE KINASE PLANT 2 504 - -
Amo01g0705 508 Gene3D Transferase(Phosphotransferase) domain 1 262 474 - -
Amo01g0705 508 Coils Coil 206 226 - -
Amo01g0705 508 MobiDBLite consensus disorder prediction 464 508 - -
Amo01g0705 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0705 Amo-Chr1 10098549 10101874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0705 19 460 Trihelix Transcription Factor Family AT1G70460 39.509 2.03e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo01g0705 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0705 - - gmx:100813931 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0705 01 10098549 10101874 Amo07g0316 07 2944839 2948515 PCT
Amo07g0316 07 2944839 2948515 Amo01g0705 01 10098549 10101874 PCT
Amo17g1016 17 26541250 26545278 Amo01g0705 01 10098549 10101874 PCT