Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo01g0699 | ATGTTCGAAGGAGCCCTAGGAGACCCTCAAATCAATTCACTAATCAAGGCTTGCGGAGCGCTGGTCCCAACCACCAGCTTGATCAACTTCAAGAAGATTCTCAATGCAACATTGGAAGACCTCAGAAACCAAAGCACAAGAAAGAACTACTTTGCCACTTCACATAATGTTATGGGAGATGACACTGTATATGGCATGTTCCAATGTAGAAGATACCTTTCTAACACCGATTGCGCCGCCTGTGTTGCCGCTGCCACTGCCGATATCCTTAGTTGCTCCGGTGGGATTAGTTCCCATCTTGTATACGACGGGTGCTCCCTCAGATATGGACCATTCAGCTTCTTCACTGATGCCATTCGTGGTGTCAATGGTATTCTGTGTGGAAATCAAACTTCAAAGGGAGAAACCAATAAGGATGATTTTAGTGAGGAAGTAAAACAAGTGCTAAACAAGCTACAAATAGCAACACCCAAAATCCCTAATTACTATGCAGCCACAAAGACACAATCAATCTATGCTATTGCACAATGTGTTGAAACTGTTTCAGCAAATAGTTGTCATGCTTGCCTCAACCGTGGATTCAACGACATACAAGGTGATTCACGCAAGAAGTCGTATATAATATTTGGTGTTTTGGGAGGTGTAGCTCTTATTATTATGGTCTTCTTTGGATTGTATCGTCGTTTATGTGCCGGACTTAGTTTCAAGAAAACCATGAGAGTTCCTAAAGGTGAAATACCAGGAGCAACCAAGTTGAAAGCGCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAATGGAGAAAATAGACTAGGAGGAGGTGGCTTTGGCAATGTATACAAGGGAACTTTGAAAAATGGTAAAGTTATTGCGGTGAAGAAATTGTTCTCAGGTCAATCCAAGAAGTTGGAGGATGACTTTGAAAGTGAAGTGAAGTTTCTAAGTAATGTTCATCACCGAAACCTTGTTAGACTCCTTGGATTCTGCAATAAAGGCCAAGAGAGAATAATAGTTTATGAATACATGACAAATGGCAGTCTTGATAAATTGTTATTTGGTAAGGAAAAAGGTTGCCTAAATTGGAAGCAACGTTATGATATGGTTTTAGGCACAGCAAGGGGATTGGCCTATCTACATGAAGAGTTTTATGTTTCAATCATACATAGAGATATCAAAAGTGGCAACATCCTCTTAGACCATGAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGCAAGGGGATACACAGCACCTGAATATACAATTTACGGCCAATTATCAGAAAAAGTTGATACATACAGCTATGGTATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACCGAAATAGTGAAAAATAATTATAATGATGATGACGACCATGAATATCTTATCAAACAACAAGGCAAGCACCTAGAGTTAGTGGATAAGAATTTAGACCCTAATGACTATGATGTGGAAGAAGTGAAGAGAGTGATAGAGATTGCTTTAATGTGCACTCAAGCATCACCATCAAAGAGGCCCAAAATGTCTCAAGTAGTAGTCTTACTCACAAGTAAGGCCCAACTTGAGAATTTGCAACCTTCAATGCCTGTATTTATTGAGTCAAACTTGAAATCTCAAGGAAGCAATTTCGGCTCAAATGCTACCGTCTCTGATTCTATTTTATCAGCTAGATGA | 1698 | 0.391 | MFEGALGDPQINSLIKACGALVPTTSLINFKKILNATLEDLRNQSTRKNYFATSHNVMGDDTVYGMFQCRRYLSNTDCAACVAAATADILSCSGGISSHLVYDGCSLRYGPFSFFTDAIRGVNGILCGNQTSKGETNKDDFSEEVKQVLNKLQIATPKIPNYYAATKTQSIYAIAQCVETVSANSCHACLNRGFNDIQGDSRKKSYIIFGVLGGVALIIMVFFGLYRRLCAGLSFKKTMRVPKGEIPGATKLKAPINYKYNDLKAATNNFNGENRLGGGGFGNVYKGTLKNGKVIAVKKLFSGQSKKLEDDFESEVKFLSNVHHRNLVRLLGFCNKGQERIIVYEYMTNGSLDKLLFGKEKGCLNWKQRYDMVLGTARGLAYLHEEFYVSIIHRDIKSGNILLDHELQPKISDFGLARGYTAPEYTIYGQLSEKVDTYSYGIVVLEIISGQKSTEIVKNNYNDDDDHEYLIKQQGKHLELVDKNLDPNDYDVEEVKRVIEIALMCTQASPSKRPKMSQVVVLLTSKAQLENLQPSMPVFIESNLKSQGSNFGSNATVSDSILSAR* | 566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo01g0699 | 565 | CDD | STKc_IRAK | 276 | 524 | - | - | |
| Amo01g0699 | 565 | ProSiteProfiles | Gnk2-homologous domain profile. | 122 | 225 | IPR002902 | - | |
| Amo01g0699 | 565 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 5 | 198 | - | - | |
| Amo01g0699 | 565 | SMART | serkin_6 | 270 | 523 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Amo01g0699 | 565 | SUPERFAMILY | Protein kinase-like (PK-like) | 260 | 538 | IPR011009 | - | |
| Amo01g0699 | 565 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 5 | 198 | - | - | |
| Amo01g0699 | 565 | ProSiteProfiles | Gnk2-homologous domain profile. | 12 | 114 | IPR002902 | - | |
| Amo01g0699 | 565 | ProSitePatterns | Protein kinases ATP-binding region signature. | 276 | 299 | IPR017441 | GO:0005524 | |
| Amo01g0699 | 565 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 202 | 547 | - | - | |
| Amo01g0699 | 565 | ProSiteProfiles | Protein kinase domain profile. | 270 | 539 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Amo01g0699 | 565 | Pfam | Protein tyrosine and serine/threonine kinase | 273 | 521 | IPR001245 | GO:0004672|GO:0006468 | |
| Amo01g0699 | 565 | Gene3D | - | 15 | 114 | IPR038408 | - | |
| Amo01g0699 | 565 | Gene3D | - | 124 | 211 | IPR038408 | - | |
| Amo01g0699 | 565 | Gene3D | Transferase(Phosphotransferase) domain 1 | 347 | 536 | - | - | |
| Amo01g0699 | 565 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 391 | 403 | IPR008271 | GO:0004672|GO:0006468 | |
| Amo01g0699 | 565 | Gene3D | Phosphorylase Kinase; domain 1 | 236 | 346 | - | - | |
| Amo01g0699 | 565 | Pfam | Salt stress response/antifungal | 127 | 197 | IPR002902 | - | |
| Amo01g0699 | 565 | Pfam | Salt stress response/antifungal | 28 | 109 | IPR002902 | - | |
| Amo01g0699 | 565 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 202 | 547 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo01g0699 | Amo-Chr1 | 9965363 | 9978908 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo01g0699 | 7 | 565 | Receptor kinase-like Gene Family | AT1G70520 | 34.380 | 3.22e-96 | 305 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Amo01g0699 | PK_Tyr_Ser-Thr | 3.3e-43 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo01g0699 | - | - | ahf:112723943 | 858.981 |