Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0686 ATGGGAATCCATATTATGAAGATTTTGATCAAACACAAACACTCATTTGGTTTCTCAATCTCCATTCGATCGAAAACTACGTCGGCTAAGTATGTCGCCTCGAGAGTTCGAGACCCTACATTTGAGAAGCTCATGGACAAGTACAAGAGCCTCTTCAAAGTCATTGCCATTCAAGATCTCATCCTCACAAATCCCAGGAATCCGTCCGTGTCCATTGACTTTCTCTCCAGGCTCTCCCAGAAACTCCATCTCAACCGCGGTGCCACTTCCTTCCTCCGCAAGTTTCCTCACATCTTCCAAATTTATTATGACCCCTCCAAGTTGCTGCCTTTTTGCAGGCTCACAGATGCTGCTCTTGATGTTTCCAAGCAGGAAGAGAATGCCATTAATGCTTCTTTGCCAATGGTGGCTGATCGATTGGTCCGGATATTGTCCATGTCTGCGTCCAAAACAGTTCCCCTTCGAGCAATTTTCAAGGTCTGGAGGGAGCTTGGGCTGCCTGATAATTTCGAGGACTCAGTTATATCTGCAAATCCTAGTGTTTTCCAGCTGTGTGATGCCCATGAACCTAACACTCATTTGTTGAAGCTGGTTGAAGGTGTTCGTCGAAATGGTTTTAGAGCAGCCATTGAAGATTGGAGGGTTGTTGAGTGCTGCAAGGAGGATTGCAATGTCAGGACAGAATTGCAGTTCAGTTTTAAGCATGGGTATCCTCCAGGGATGAAACTTGGCAAGAACTTCAAGGCCAAGGTGAAAGAATGGCAGAGTTCACCGTACGTTGGGCCCTATGAGGTGGTTGTTGGGGAGAAAAAGAAGTCTAAGGCAGCATTGATGGCCATGGAGAAACGAGCAGTGTCGATTGTTCACGAGTTCCTGAGTTTAACCGTGGAGAAGATGGTAGAAGTTGAAAAGATCAGCCAATTCAGAAAATGGTTTGGGATTGACTTCAACATAAGAGACCTGTTCTTGGATCATCCAGGGATCTTCTATCTATCAACAAAGGGGAAACGCCACACTGTTTTCTTGAGGGAAGCATATGAACGAGGTTGTTTGATTGAACCAAATCCTGTATATGATGCAAGGAGAAGGCTTCTTGATCTTGTTGCTATGGGACGTCGTTGTCGTTCTGCTATTAATTCAAATTTGCAGGATGGAAGCAGCAGCAGCGACAATGATGGCATTGAAGCAGAAGAAACCCAACAAAGGCATGGCTCATTATCTTCTTGA 1227 0.4515 MGIHIMKILIKHKHSFGFSISIRSKTTSAKYVASRVRDPTFEKLMDKYKSLFKVIAIQDLILTNPRNPSVSIDFLSRLSQKLHLNRGATSFLRKFPHIFQIYYDPSKLLPFCRLTDAALDVSKQEENAINASLPMVADRLVRILSMSASKTVPLRAIFKVWRELGLPDNFEDSVISANPSVFQLCDAHEPNTHLLKLVEGVRRNGFRAAIEDWRVVECCKEDCNVRTELQFSFKHGYPPGMKLGKNFKAKVKEWQSSPYVGPYEVVVGEKKKSKAALMAMEKRAVSIVHEFLSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIEPNPVYDARRRLLDLVAMGRRCRSAINSNLQDGSSSSDNDGIEAEETQQRHGSLSS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0686 408 Pfam Plant organelle RNA recognition domain 36 373 IPR021099 GO:0003723
Amo01g0686 408 PANTHER OS04G0618900 PROTEIN 11 399 - -
Amo01g0686 408 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 11 399 IPR045040 GO:0003723
Amo01g0686 408 MobiDBLite consensus disorder prediction 380 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0686 Amo-Chr1 9783460 9784686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0686 - - gmx:100808404 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0686 01 9783460 9784686 Amo19g1567 19 37044955 37049474 PCT
Amo01g0686 01 9783460 9784686 Amo09g0988 09 20825630 20830457 PCT