Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0644 ATGGGAAAGTGCTCCTTTCAGGATTCCCTCAAAACTTTGGAAGCTGATATTCAGTATGCTAATACACTGGCATTAAGTAATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGACTATCATACAGTCCAGCAGCCCCCATTTTTCTGTTTCTTGTTCAGTGGGCAGATTTTCGCCTTGCTGCTGCTCTTGGTCTCCTCAGAATCCTAATTTACGTGAACTGTGGAAGTGGGAAGAATACCATGTCAATATATGAAAGGAAAGCAAGTATTAGGCAATTTTACTCTGTGATATTCCCTGCTTTATTGCAACTCCAGAAAGGGATCACGGATTTGGAGGAAAGAAAACAGAAGGAAATGTATTTGCTTAGGTACCAAAGTAAAAGTGATTTTGAAGAGAAAGGAGGAGAATATGAAATTGACAATGAAAGAGAAGAGGAATGTGGTGTTTGCTTGGAGGTGAAAGGGAAAGTTGTGCTGCCTAATTGCTGCCACACTATGTGTTTGAATTGCTACAGATCTTGGTGCGTGAGGTCTGAGTCTTGCCCCTTCTGTAGGGATAGCCTAAAGAGAATGGACTCTGGTGACCTTTGGATTTACACAGACAAGAGTGACATTGTTGATCTTGGCACAATTTACAGAGAGAATTCCAAGATGCTATTTCTGTATATAGAGAAGTTGCCCCTTGTAATTCCTGACCCAAGACATGTATCCTATGATCCATTCCTAAGGTGA 735 0.4122 MGKCSFQDSLKTLEADIQYANTLALSNPRDKDGGCYQMRLSYSPAAPIFLFLVQWADFRLAAALGLLRILIYVNCGSGKNTMSIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEMYLLRYQSKSDFEEKGGEYEIDNEREEECGVCLEVKGKVVLPNCCHTMCLNCYRSWCVRSESCPFCRDSLKRMDSGDLWIYTDKSDIVDLGTIYRENSKMLFLYIEKLPLVIPDPRHVSYDPFLR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0644 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Amo01g0644 244 PANTHER RING FINGER PROTEIN 41, 151 1 244 - -
Amo01g0644 244 SMART ring_2 148 185 IPR001841 -
Amo01g0644 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 244 - -
Amo01g0644 244 SUPERFAMILY RING/U-box 147 191 - -
Amo01g0644 244 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Amo01g0644 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 195 IPR013083 -
Amo01g0644 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0644 Amo-Chr1 9378970 9381652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0644 60 217 C3H Transcription Factor Family AT1G04360 24.540 4.46e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0644 - - gmx:100808567 407.142