Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0640 ATGGCGAAAACGACGTCGTTACTCCTTTGCTCTCTTCTCCTCTTTGGAACCCCTAGCTCTAATCCAGAAGTCACACACAAGGTTTACTTTGATGTTGAGATTGACGGAGAGCCTGCAGGTTTTTTATTTTTTATTTTTGTTTTTGTTTTTGTTATATATGAAATTCTAAGATTGCAGTCATATAAGAAGTGTCGAATTGTAATGGGCCTTTTTGGAAAGACAGTTCCTAAGACAGCAGAAAACTTTCGAGCTCTTTGCACAGGTGAGAAGGGAACTGGAAAAAGTGGAAAGCCTCTTCATTTCAAAGGTAGCTCATTCCACAGGATCATACCTAGCTTTATGATCCAGGGAGGTGACTTTACACATGGGAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGACGAGAACTTTAAGCTAAAGCACACTGGACCAGGACTTTTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAGTTCTTCATTACTACTGTTACAACTAGCTGGTTGGATGGAAAGCATGTTGTTTTCGGAAAGGTGCTTTCTGGAATGGATGTTGTATACAAGATTGAAGCTGAAGGAAAACAAAGTGGCACTCCCAAGAGCAAGGTCACAATTGCTGACAGTGGTGAACTACCTCTATAA 660 0.4091 MAKTTSLLLCSLLLFGTPSSNPEVTHKVYFDVEIDGEPAGFLFFIFVFVFVIYEILRLQSYKKCRIVMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHFKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYKIEAEGKQSGTPKSKVTIADSGELPL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0640 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 164 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 118 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 176 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 214 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 219 - -
Amo01g0640 219 SUPERFAMILY Cyclophilin-like 63 217 IPR029000 -
Amo01g0640 219 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 101 118 IPR020892 GO:0003755|GO:0006457
Amo01g0640 219 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 65 216 IPR002130 GO:0000413|GO:0003755
Amo01g0640 219 CDD cyclophilin_ABH_like 26 215 - -
Amo01g0640 219 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 42 - -
Amo01g0640 219 Gene3D - 17 218 IPR029000 -
Amo01g0640 219 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 56 219 - -
Amo01g0640 219 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 21 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0640 Amo-Chr1 9337153 9339698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0640 75 196 U-box Gene Family AT5G67530 48.780 2.39e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0640 K01802 - gmx:100792140 329.331