Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0631 ATGGAATCCAAGATTAATAATAAGACTTGTCAAGAAGGGTTGCACCACAGAATCTCTGCATTGCTTGAATTTTCAGCCTCAGATGATGTAACAGCGTTCAAGGAAGCTATTGAGAAAGAGGGCCATAACGTTGGTGAGATTGGATTATGGTATGGTAGGAGAATTGGAACAAAGGAAGTTGGATATGAAGAGAGAACCCCTCTTATGATTGCTGCAACGTTTGGCAGCAAGAATGTCTTGTCTTACATTCTCAAAACAGGCAAAGCTGATGTCAACAAATCTTGCGGCTCGGATTCAGCCACGGCGCTCCACTGCGCCGTGGACGGAGCCTCCCCAGCCTCCGCCCAAATTATCAAGTTGTTGCTTGAATCTTCAGCGAATCCTAACGCCGTGGATGCCAGAGGCAACCGGTGCTACGACTTGGTTGTCTCCATGCCGTCCGTCTACAACACAAGAAAGAAGGCCGTACAATCGCTTCTAGAAGGGGCGAACAATGTATATAAGAAGGAGGCAACATCGATTGGAATATCATCAAGCTTGAACGAGAGAGGCAAGGTAGCTGCTGGTACGGCAGAGTTTCCGGTGTCTCCTCGGTATAAAGAGTTTCCGGTGGACCACTCGCTACCGGACATAAAGAACGGTATATATAGCACGGACGAGTTTAGAATGTATACCTTCAAAGTGAAACCATGTTCGAGAGCGTATTCACACGATTGGACAGAGTGTCCTTTCGCGCATCCCGGCGAGAATGCCAAGAGGCGCGACCCGAGGAAATACCAGTACAGCTGCGTTCCCTGTCCGGAGTTCCGGAAAGGGAGCTGCAGCAAAGGAGATTCCTGCGAATACGCGCATGGAATCTTCGAGTGCTGGCTTCACCCGGCTCAATACAGAACAAGGCTGTGCAAGGACGAGATGGCATGTACTAGAAGAGTGTGTTTCTTCGCGCACAAGCCAGAAGAATTACGTCCTCTGTATGCTTGTTCTGGCTCTGCATTGCCTTCTCCCACTTCTTATTCGCCAGGTGGCGCTAATTCATTGGACATTTGTTCATCCTTATCGTCACCAGATGGTGGTGGATCTGGATCTTCACCGGTGTGGCAAGCTCCTCAAGCTAAGCTTCCCAAAAGCAGGCTAAACCTAGCCCTCAGCGCTAGAGATGTTAATCTTGACATCCAGTCGATCGGCCTCGAAAGCCGGCGACTGATGCAAAAGCTTATGATGGAAGAGATGGTTTCATCAGCATTATCTCCCAATTCTTCCACCTGGAGAAACTCGTTGCCTACGAGTCCGTCTTTCGCTTCTCCGGTTCCGTCTCCGACTAATATTTGGGGAAGTGCTTCCAACTATTCTCCTTCACATTCAAAAGTCATTGGATCGCCGGCGGCATACGGCCTGGATCTTTCCGGTGGTGGCGTCTCTTTGCGGAGTCCGAGCGAGATTCCTTCTCCTTCGAAAAACTCCATAGGCATGGAATCATCGTCGTCTACCTTGTTTGGTTGGGGTTCCCCTGATGGAAAATTAGATTGGTCCATTCGCAGAGATGAGTTTAACAAAATGAACAAGTCAAATTCTTTCGCCTTTCGAAGCACTGCTAATCTTGTTGCGACTCCGGAGCTGGCGGAGGATGCTATTGATGAACTAGATGTGTCTTGGGTTAGTTCTCTTGTGAAGGATTCTTCGAGCAACAACTACTCCACCATGTTAACACATGAACAGTTTAATGTCATGTAA 1731 0.4841 MESKINNKTCQEGLHHRISALLEFSASDDVTAFKEAIEKEGHNVGEIGLWYGRRIGTKEVGYEERTPLMIAATFGSKNVLSYILKTGKADVNKSCGSDSATALHCAVDGASPASAQIIKLLLESSANPNAVDARGNRCYDLVVSMPSVYNTRKKAVQSLLEGANNVYKKEATSIGISSSLNERGKVAAGTAEFPVSPRYKEFPVDHSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYQYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDEMACTRRVCFFAHKPEELRPLYACSGSALPSPTSYSPGGANSLDICSSLSSPDGGGSGSSPVWQAPQAKLPKSRLNLALSARDVNLDIQSIGLESRRLMQKLMMEEMVSSALSPNSSTWRNSLPTSPSFASPVPSPTNIWGSASNYSPSHSKVIGSPAAYGLDLSGGGVSLRSPSEIPSPSKNSIGMESSSSTLFGWGSPDGKLDWSIRRDEFNKMNKSNSFAFRSTANLVATPELAEDAIDELDVSWVSSLVKDSSSNNYSTMLTHEQFNVM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0631 576 ProSiteProfiles Ankyrin repeat profile. 98 133 IPR002110 GO:0005515
Amo01g0631 576 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 285 IPR000571 GO:0046872
Amo01g0631 576 PANTHER UNKEMPT FAMILY MEMBER 9 437 IPR045234 -
Amo01g0631 576 PANTHER UNKEMPT FAMILY MEMBER 489 564 IPR045234 -
Amo01g0631 576 Gene3D - 261 323 - -
Amo01g0631 576 Gene3D - 13 170 IPR036770 -
Amo01g0631 576 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Amo01g0631 576 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Amo01g0631 576 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Amo01g0631 576 Pfam Ankyrin repeats (3 copies) 56 132 IPR002110 GO:0005515
Amo01g0631 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 489 564 - -
Amo01g0631 576 SUPERFAMILY Ankyrin repeat 22 145 IPR036770 -
Amo01g0631 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 9 437 - -
Amo01g0631 576 SMART ANK_2a 63 93 IPR002110 GO:0005515
Amo01g0631 576 SMART ANK_2a 98 130 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0631 Amo-Chr1 9230653 9232383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0631 16 561 C2H2 Transcription Factor Family AT5G12850 39.219 1.66e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g0631 Ank_2 9.1e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0631 - - aip:107616248 1144.8