Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0626 ATGCACACAAGCTGTTTGATATGTTGTTTCAACTGTTATAGTGAGAACCCTGCTTCTAGAAGTTCTCATGAGTTCTTCTTCTGTTGCCACTTTGGTTCCTTTAAGGAAACTATGAAGTTTGGAAACGTTTACTCTGAATTCAGTTGTCCAGACAGCAAGCAACTCTCCATGAACTTCATTTGTAGATCAGTGACTCCTTTCTTGTTCATCATAGTTTTTCTTTTTCCTCTGACTACTATTGCTGCTGATCTGAGCTCAGACAAGCAAGCTCTTCTTGATTTCGCCAATGCCATTCCTCACCGTCGAAATCTTCAGTGGAATCCTGCATCCTCAGTTTGTACATCTTGGGTAGGCATAACTTGCAATCAAAATRGAACTCGTGTTATTTATGTCCGGCTCCCCGGAGTTGGACTAGTTGGCGCAATTCCGACCAACACACTTGGCAAGCTTGATGCTGTAAAAATCATTAGCCTTCGRTCCAACCTACTTGGTGGAAATCTGCCTGCTGACATTGCYTCTCTTCCGTCTCTCGAGTATCTTTATCTGCAGCATAACAACCTTTCCGGTGACATACCTTCCTCATTGTCACCTAAACTCAATGTACTCGATTTATCATATAATGCCTTCACCGGAAGCATTCCAAAGACACTGCAAAATTTGACASAATTAACTAGTTTGAATCTCCAGAACAACTCATTATCTGGAGAGATACCTAATCTAAATGCTACYAGTCTCAGGAACTTGAATTTAAGCTACAACCATTTGAATGGTTCTATCCCTTCRGCTCTTSRGATTTTTCCCAACTCCTCTTTTGAAGGAAACATTCTCTTATGTGGACCACCTTTRAAGCCATGCTCYGGGGTTCCACCRGCAGCTCCACCAGCTGTGACACCGGCTCCACRGCCATCTATTGGAAGCTCAAAGAATAAACTGAGTAAAGTAGCTATCATTGCAATTGYGGTTGGAGGAGGCGTGCTGCTTTCTCTTGTAGCTCTTGTTATTGTCCTTTGCTGTGTAAAGAAGAAAGATGAGGAAGAAGCTCCTRGTGCAGTTAAAGGGAAGGGTTCTATTGGAGGTAGGAGTGAGAAGCCGAAAGAACAGTTTGGTAGTGGAGTGCAAGAACCTGAGAAGAACAAGCTGGTTTTCTTCGAGGGAAGCTCTTACAATTTTGATCTTGAGGATTTGCTAAGAGCTTCGGCCGAAGTTTTGGGAAAGGGTAGCTATGGAACTGCATACAAGGCTATACTAGAGGAGTCGACCACAGTTGTGGTGAAAAGGTTGAAGGAAGTTGTGGTTGGTAAGAAGGACTTTGAGCAGCAGATGGAGATCATTGGAAGGGTTGGACAACACCAAAATGTGGTGCCTCTTCGCGCTTATTATTATTCGAAAGACGAGAAGCTKCTGGTTTATGATTATGTCCCTAGTGGCAACTTATCCTCCCTCTTGCACGGCAACAGGGCAGGTGGAAGAACTCCATTAGATTGGGACACACGTCTTAAAATCGCTCTCGGAACAGCCAGAGGACTAGCTCACCTTCATTCTGTTGGYGGTCCGAAATTTGCACATGGAAACATTAAGTCCTCAAATGTSCTAATCAACCATGATAAAGACGGCTGCATWTCTGATTTCGGCCTAGCCCCTCTTATGAATGTGCCTGTAACACCTTCTAGAGCTGTAGGTTACCGTGCACCCGAGGTAGTTGAGACCMGAAAGCACTCTCATAAATCAGATGTGTACAGCTTTGGTGTCCTACTGCTAGAGATGCTTACCGGGAAAGCGCCACTTCAGTCTCCCGGACGCGAGGACATGGTTGATCTGCCTAGGTGGGTCCAATCTGTTGTTAGGGAAGAATGGACTGCCGAGGTTTTCGACGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGCTGCAAATAGCCATGACCTGTGTAGCAAAGATGCCGGATATGCGGCCGAACATGGATGAAGTGATGARAATGATAGAAGAGGTCCGGCAATCTGACTCGGARAACCGGCCGTCTTCTGAAGAGTATAAGTCCAAGGACTCAAATGTTCAAACTCCATAA 2079 0.4425 MHTSCLICCFNCYSENPASRSSHEFFFCCHFGSFKETMKFGNVYSEFSCPDSKQLSMNFICRSVTPFLFIIVFLFPLTTIAADLSSDKQALLDFANAIPHRRNLQWNPASSVCTSWVGITCNQNXTRVIYVRLPGVGLVGAIPTNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLEYLYLQHNNLSGDIPSSLSPKLNVLDLSYNAFTGSIPKTLQNLTXLTSLNLQNNSLSGEIPNLNATSLRNLNLSYNHLNGSIPSALXIFPNSSFEGNILLCGPPLKPCSGVPPAAPPAVTPAPXPSIGSSKNKLSKVAIIAIXVGGGVLLSLVALVIVLCCVKKKDEEEAPXAVKGKGSIGGRSEKPKEQFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKKDFEQQMEIIGRVGQHQNVVPLRAYYYSKDEKLLVYDYVPSGNLSSLLHGNRAGGRTPLDWDTRLKIALGTARGLAHLHSVGGPKFAHGNIKSSNVLINHDKDGCISDFGLAPLMNVPVTPSRAVGYRAPEVVETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGREDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKMPDMRPNMDEVMXMIEEVRQSDSENRPSSEEYKSKDSNVQTP* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0626 692 Gene3D Ribonuclease Inhibitor 241 286 IPR032675 -
Amo01g0626 692 Gene3D Ribonuclease Inhibitor 84 240 IPR032675 -
Amo01g0626 692 MobiDBLite consensus disorder prediction 666 683 - -
Amo01g0626 692 ProSiteProfiles Protein kinase domain profile. 397 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0626 692 MobiDBLite consensus disorder prediction 350 371 - -
Amo01g0626 692 PANTHER LRR RECEPTOR-LIKE KINASE 45 692 - -
Amo01g0626 692 MobiDBLite consensus disorder prediction 666 692 - -
Amo01g0626 692 Pfam Protein kinase domain 400 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0626 692 SUPERFAMILY L domain-like 89 285 - -
Amo01g0626 692 Gene3D Transferase(Phosphotransferase) domain 1 473 690 - -
Amo01g0626 692 ProSiteProfiles Leucine-rich repeat profile. 222 244 IPR001611 GO:0005515
Amo01g0626 692 ProSitePatterns Protein kinases ATP-binding region signature. 403 434 IPR017441 GO:0005524
Amo01g0626 692 SUPERFAMILY Protein kinase-like (PK-like) 401 675 IPR011009 -
Amo01g0626 692 Pfam Leucine rich repeat N-terminal domain 85 122 IPR013210 -
Amo01g0626 692 Gene3D Phosphorylase Kinase; domain 1 365 472 - -
Amo01g0626 692 PANTHER OS05G0588300 PROTEIN 45 692 - -
Amo01g0626 692 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Amo01g0626 692 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515
Amo01g0626 692 CDD STKc_IRAK 403 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0626 Amo-Chr1 9099044 9102589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0626 70 690 Receptor kinase-like Gene Family AT5G58300 66.719 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo01g0626 Pkinase 5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0626 - - gmx:100796171 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0048 11 679451 683093 Amo01g0626 01 9099044 9102589 hybridization
Amo01g0626 01 9099044 9102589 Amo07g1086 07 20725053 20727584 PCT
Amo07g1086 07 20725053 20727584 Amo01g0626 01 9099044 9102589 PCT