Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0618 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACCACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTTTCACTCCAACGGCACCAATGGAACCAATGGAACCAATGGAATCAATGGCAACGCCAACAACCACAATTCCGTGTCCCATGGTTCTCGCCGCTCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGTGTGTCCATCCAAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAACCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCGTTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAGCTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGACGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAGGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG 1791 0.4472 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHFHSNGTNGTNGTNGINGNANNHNSVSHGSRRSTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMCVHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQGEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0618 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 540 IPR001650 -
Amo01g0618 596 Coils Coil 540 560 - -
Amo01g0618 596 CDD DEADc 162 359 - -
Amo01g0618 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Amo01g0618 596 CDD SF2_C_DEAD 370 508 - -
Amo01g0618 596 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Amo01g0618 596 Gene3D - 364 558 IPR027417 -
Amo01g0618 596 SMART helicmild6 418 499 IPR001650 -
Amo01g0618 596 Pfam Helicase conserved C-terminal domain 382 499 IPR001650 -
Amo01g0618 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 88 561 - -
Amo01g0618 596 SMART ultradead3 170 373 IPR014001 -
Amo01g0618 596 Coils Coil 237 257 - -
Amo01g0618 596 MobiDBLite consensus disorder prediction 1 96 - -
Amo01g0618 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 519 IPR027417 -
Amo01g0618 596 Gene3D - 111 362 IPR027417 -
Amo01g0618 596 Pfam DEAD/DEAH box helicase 175 345 IPR011545 GO:0003676|GO:0005524
Amo01g0618 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 358 IPR014001 -
Amo01g0618 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 88 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0618 Amo-Chr1 8996394 9004604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0618 151 521 Eukaryotic Initiation Factors Gene Family AT1G72730 34.667 2.12e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0618 K12823 - gmx:100787545 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0057 11 781419 789463 Amo01g0618 01 8996394 9004604 hybridization