Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0614 ATGTTACTTATAAATAGGGGTCCCTCATATACATTAGAACTCAGAGCAGAGGAAAGGAACAACAATTTGAACCTTCCCCTGTTTCTTGCCAAAGGCTTAGAACAAAGGAGAATGCCACAACAAGAGTTTTCAATGGCTCTAATGATTCTTCTCATTGTTCTCTCCATTGACATGATTATCATGCAAGGTGCCACAGCTGACTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGTGGTGGTGATGCCTCTGGCACAATGGGAGGTGCTTGTGGATATGGGAATTTGTATAGCCAAGGTTATGGAACAAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGATCATGCTATGAGATGAAGTGTAATGATGACCCAAGATGGTGCAAGCCGGCTTCCATCATCGTCACGGCCACCAACTTCTGCCCGCCGAACCCGGCTCTGCCCAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAGCACTTTGATATGGCTGAGCCAGCATTCTTGCAAATTGCTGAATATAGGGCTGGAATTGTGCCTGTTGCTTTTAGAAGAGTTCCTTGCATGAAGAAGGGAGGAATAAGATTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTAACAAACGTTGGAGGTGCTGGTGATGTTCATTCAGTTTCCATCAAAGGATCAAGAACTGGGTGGCAATCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTCAATGGTCAAACCCTCTCATTCCAAGTCACCGCCAGTGACGGTAGAACTGTCACAAGCTTCAACGTGGCACCATCTAATTGGCAGTTTGGTCAAACCTTTCAAGGAAGCCAATTCTAG 882 0.4558 MLLINRGPSYTLELRAEERNNNLNLPLFLAKGLEQRRMPQQEFSMALMILLIVLSIDMIIMQGATADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCNDDPRWCKPASIIVTATNFCPPNPALPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTVTSFNVAPSNWQFGQTFQGSQF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0614 293 Gene3D - 58 197 IPR036908 -
Amo01g0614 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 89 201 IPR007112 -
Amo01g0614 293 Pfam Lytic transglycolase 106 190 IPR009009 -
Amo01g0614 293 Gene3D - 201 293 IPR036749 -
Amo01g0614 293 PANTHER EXPANSIN-A15 42 293 IPR002963 GO:0009664
Amo01g0614 293 SMART dpbb_1 106 191 IPR007112 -
Amo01g0614 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
Amo01g0614 293 PANTHER EXPANSIN 42 293 - -
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 70 85 IPR007118 GO:0005576
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 110 128 IPR007118 GO:0005576
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Amo01g0614 293 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Amo01g0614 293 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Amo01g0614 293 PRINTS Expansin signature 140 150 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 176 189 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 101 115 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 159 176 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 128 139 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
Amo01g0614 293 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Amo01g0614 293 SUPERFAMILY PHL pollen allergen 198 290 IPR036749 -
Amo01g0614 293 SUPERFAMILY Barwin-like endoglucanases 70 219 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0614 Amo-Chr1 8955246 8958888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0614 43 293 Expansin Gene Family AT2G40610 77.778 1.49e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0614 - - gmx:100499976 462.996