Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0610 ATGGCTAGAAAGAAAGTGGAGCTCAAATACATAACAAATGACTCAAAGAGGAAGGCAACACTAAGGAAAAGAAAAAGTGGTCTAACAAAAAAGGTTGATGAAATTAGCACTCTTTGCGGGGTTGATGCTTGTGCTATAATCTATACCCCTGATGAGCCACGGCCAGAGGTATGGCCGTCGCCATCAGAGGTGAATCGAGTGGTCTCTAGATTTAAGGAGATGCCTGAATTAGAACAAAGTAAGAAAATGATGTCTCAAGAGAGTTTCTTGAGACAAAGGATCCAAAAAGGCCAAGATCAACTAAAGAAACTAAAAAATGAGAACAGAAAGAAAGAAATGAACAATCTCATGTTTCAATCCTTAGCTGGCTGCCAATCCCTTGACAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGGTTGACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTAGCAATAATAATGGAGTAGCAACCATCAACGGAGAGCAAGCTCAAGTGGACAATATCATCAATGGTGGTGTGTTTCCATTTGTGGATGGTGCTAATAATTTCCAAAATGATCCATTTGTGGATGGTGCTAACATTTTCCAAAATGATTATCGCCCAGCCCCATTCGATCCTTGA 663 0.4027 MARKKVELKYITNDSKRKATLRKRKSGLTKKVDEISTLCGVDACAIIYTPDEPRPEVWPSPSEVNRVVSRFKEMPELEQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLAGCQSLDNATMIDLNDLAWIIDQNIKEVDKQISKLQGQEGTSSNNNGVATINGEQAQVDNIINGGVFPFVDGANNFQNDPFVDGANIFQNDYRPAPFDP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0610 220 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Amo01g0610 220 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Amo01g0610 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 167 - -
Amo01g0610 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 - -
Amo01g0610 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Amo01g0610 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo01g0610 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo01g0610 220 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Amo01g0610 220 Coils Coil 87 114 - -
Amo01g0610 220 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Amo01g0610 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0610 Amo-Chr1 8897799 8898461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0610 1 174 Type I MADS-box Gene Family AT5G48670 50.568 8.34e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo01g0610 SRF-TF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0610 - - aip:107644294 365.54