Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0609 ATGGCTAGAAAGAAAGTGGAGCTCAAATATATAGCAAATGATTCAAAGAGGAGGGCAACACAAAAGAAAAGGAAAAGTGGTCTGATAAAAAAGGCTGATGAGATTAGCACTCTTTGCGGGGTTGATGCTTGTGCTATAATCTATACCTCTGATGATCCACGGCCAGAAGTATGGCCATCGCCATCAGGGGTGAACCGAGTGATCTCTAGATTTAAGGAGATGCCTGAATTAGAACAAAGCAAGAAAATGATGTCTCAAGAGAGCTTCTTGAGACAAAGGATCCAAAAAGGCCAAGATCAACTAAAGAAATTAAAGAATGAGAATAGAAAGAAAGAAATGAACAATCTCATGTTTCAATCCTTAGGTGGCTACCAATCCCTTGACAATGCCACCATAATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAACGAGGTCAACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTAGCAATAATAATGGAGTAGCAACCATCAATGGAGAGCAAGCTCAAGTGGACAATATCATCAATGGTGGTGTATTTCCATTTGTGGATAATATCATCAATGGAGAGCAAGCTCAAGTGGACAATATCATCAATGGTGGTGTATTTCCATTTGTGGATGCTGCTAATAATTTCCAAAATGATTATTGCCCAACCCCATTCAATCCTTGA 696 0.3922 MARKKVELKYIANDSKRRATQKKRKSGLIKKADEISTLCGVDACAIIYTSDDPRPEVWPSPSGVNRVISRFKEMPELEQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLGGYQSLDNATIIDLNDLAWIIDQNINEVNKQISKLQGQEGTSSNNNGVATINGEQAQVDNIINGGVFPFVDNIINGEQAQVDNIINGGVFPFVDAANNFQNDYCPTPFNP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0609 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Amo01g0609 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 - -
Amo01g0609 231 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Amo01g0609 231 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Amo01g0609 231 Coils Coil 87 114 - -
Amo01g0609 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo01g0609 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0609 Amo-Chr1 8887141 8887836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0609 1 174 Type I MADS-box Gene Family AT5G48670 50.568 1.14e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo01g0609 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0609 - - aip:107644294 453.366