Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0607 ATGGACCCTGACATTGCGCGGTGGGTTGCGGAATTCCACCTCCGGAGTTCCGCCCCCGACTCCCTCGTCTCCAAGATCCTTAAGGTCCTTAATCTCTCTGCCGCCGATCCCAACCTTAAGAAAACCCTACTCCTCCGCACCCTCCGATCCCAACTCTGCAATGCCTCAATCACCGAAACCGCTCTCGAGATACTGGAGCAAATCGAAGCGATTGACCGAAACGACGCCGTTCCGATCATCGATTCCATGCGCAGGGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTCAAGTACCTCGCCGCCTCCTACGACGGCACCACCAGCGGTAAGTACTTATCCGCGGTGACGCGTATCTGGCGCCGCCGCGTGGAGGAGTTGGAGCAGCGCCAGAGCGAGCTGTTCTTCGACGAGACTGCGCGATGGAGGGACGACATTGAGGCCGCACTTTTTGACACTAGGGTTTCTGATAGGTTGAAGGAGTTGAATACCCGAAACGACGCGTTTACTGAAGTTAGGTTTTATCTGCAGGAAGTGTGGGAAACAATGGGTCCTTCTTTTCTTGAATCAGTAGCAGAAATGACAAAGAACAAGGGAAAGACGAAGGGCAAGGGGAAAGGATTGCCGAATGTGATTTTGAATCCGGCACCGGTGACTATAGTGCCAGGGTATACGACAGGTGTTTGCAGAAATGCCTCTGGTGCTGAACAGGCAAGGGATCATGGTGTTGATGACAATGGTGACGGAGGCAATGATGGTTCACGTTGCATGGACGGTGTGGAGGTGAAGAGAGCTGAAGGTTCTGTTGATGGAACCCAGGAGCATGCAAAGAAGAAGAAAGCAAGAGGCAATCCTCAACATAAACGCAAGCCATCTGCATTTCGTAGATGCAGTAGAGGAGTTAAAATGTCTAGTGCTGAGGAATTGGGGACAGAAAGGTCATGGAGAAAAAATGATACTGTGCTAAGTGGAGAAGTTAAAACGGCCCGAGAATCTCTTAAATCAAGTTCTTCGGAGCTACGGGCATTGGTCAATGATCCTCTTCTTGAGGCATTGGATATACCTGACGCTTTTAGATCTAAACTTGCACGGAAAGGTACAAATCATGAACAGCCAATGGAAAACCATAGTGGAGATGTAGATGTACGAAACTCAAATACTTGCAGTACTATTAGTCCTTATCAACCTAATGATGCCGAGCACAAGAAGTCGCCTTCTGTTGAGCCGAACAAAACTGCTCATAAAAGACCCAATTTGATGGAGCCGAGTGGTACTTCTCAAACTTATGAGTGGAATGATTCAATAGAAAACATGCCCAATGGAATGCAGCCAAGAAGGAAGAATAGAAAATGGTCTTCATTAGAAGAGGAGACACTAAGGACTGGTGTACAAATGTTTGGTGCAGGAAATTGGAAAACAATTCAAAGTTTTTACAGTGATGTATTTGAACATAGACTATCATTCATCCCCAAATCTTCCCATACGAGTTGTGCGGAGTTTTCCACTGAATCCAGACAGACAATGGACCCTGACATTGCGCGGTGGGTTGCGGAATTCCACCTCCGGAGTTCCGCCCCCGATTCCCTCGTCTCCAAGATCCTTAGGGTCCTTAATCTCTCCGGCGCCGATCCCAAACTTAAGAAAACCCTACTCCTCCGCACCCTCCGATCCGAACTCTGCAATGCCTCAATCACCGAAACCGCTCTCGAGATACTGGAGCAAATCGAAGCGATTGACCGAAACGACGCCGTTCCGATCATCGATTCCATGCGCAGAGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTCAAATTCCTCGCCGCCTCCTACGACGGGACCACCAGCGGTGAGTACTTATCCGCGGTGACGCGTATCTGGCGCGGCCGCGTGGAGGAGTTGGAGCAGCGCCAGAGCGAGCTGTTCTTCGACGAGATTGCGCGATGGAGGGACGACATTGAGGCCGCTCTTTTTGACACTAGGGTTTCTGATAGGTTGAAGGAGTTGAATACCCGAAACGACGCGTTTACTGAAGTTAGGTTTTATCTGCAGGAAGTGTGGGAAACAATGGGTCCTTCTTTTCTTGAATCGGTAGCAGAAATGACAAAGAACAAAGGAAAGACGAAAGGCAAGGGGAAAGAATTGCCGAATGTGATTTTGAATCCTGTGCCGGAGACTAGAGTGGCAGGGTGTACGACAGGGATCATGGTGTTGATGACAATGGTGACGGACGACAATGATGGTTCACGTTGCATGGACGGTGTGGAGGTGAAGAGAGCTGAAGGTTCTGTTGATGGAACCCAGGAGCATGCAAAGAAGAAGAAAGCAAGAGGCAATCCTCAACTTCAACGCAAGCTGCCTGCATTTCGTAGATGCAGTAGAGGAGTTAAAATGTCTAGTGCTGAGGAATTGGGGACAGAAAGATCATGGAGAAAAAATGATACTGTGCTAAGTGGAGAAGTTAAAACGGCCCGAGAATCTCTTAAATCAAGTTTTTCAGAGCTACGAGCATTGGTCAATGATCCTCTTCCCGAGGCATTGGATATATCTGATGCTGTTAGATCTAAACTTGCACGGAAAGGAACAAATCATGAACAGCCAATGGAAAACCATAGCAGAGATGTAGATGTACCAAACTCAAATACTTGCAGGGCTATTATTCCTTATCAACCTAAAGATGCGGAGCACAAGAAGTCGCCTTCTGTTCGTCATAGTAGAGTTAATGCTGAACGTCCCAATTCAACTGAGCCAAACAATACTGCTCATAAAAGACCCAGTTTGATGGAACCGAATGGTACTTCTCAAACTTATGAGTGGAATGATTCAATAGAAAACATGCCCAATGGAATGCAGCTAAGAAGGAAGAAAAGAAAATGGTCTTCATTGGAAGAGGAGACACTAAGAACTGGTGTACAAATGTTTGGTGCAGGAAATTGGAAAACAATTCAAAGTTTTTACAGTGATGTATTTGAACATAGACTAGCAGTTGATTTGAAGGACAAGTGGAGAAACATGATGCGGTACATAAATGCAAGATTATTTGGGAAGCTTGAGACTGAAGGAAATGCTGCCAATTTTGTTGCAATTGATTAG 3087 0.4759 MDPDIARWVAEFHLRSSAPDSLVSKILKVLNLSAADPNLKKTLLLRTLRSQLCNASITETALEILEQIEAIDRNDAVPIIDSMRRAYCAVAVECTVKYLAASYDGTTSGKYLSAVTRIWRRRVEELEQRQSELFFDETARWRDDIEAALFDTRVSDRLKELNTRNDAFTEVRFYLQEVWETMGPSFLESVAEMTKNKGKTKGKGKGLPNVILNPAPVTIVPGYTTGVCRNASGAEQARDHGVDDNGDGGNDGSRCMDGVEVKRAEGSVDGTQEHAKKKKARGNPQHKRKPSAFRRCSRGVKMSSAEELGTERSWRKNDTVLSGEVKTARESLKSSSSELRALVNDPLLEALDIPDAFRSKLARKGTNHEQPMENHSGDVDVRNSNTCSTISPYQPNDAEHKKSPSVEPNKTAHKRPNLMEPSGTSQTYEWNDSIENMPNGMQPRRKNRKWSSLEEETLRTGVQMFGAGNWKTIQSFYSDVFEHRLSFIPKSSHTSCAEFSTESRQTMDPDIARWVAEFHLRSSAPDSLVSKILRVLNLSGADPKLKKTLLLRTLRSELCNASITETALEILEQIEAIDRNDAVPIIDSMRRAYCAVAVECTVKFLAASYDGTTSGEYLSAVTRIWRGRVEELEQRQSELFFDEIARWRDDIEAALFDTRVSDRLKELNTRNDAFTEVRFYLQEVWETMGPSFLESVAEMTKNKGKTKGKGKELPNVILNPVPETRVAGCTTGIMVLMTMVTDDNDGSRCMDGVEVKRAEGSVDGTQEHAKKKKARGNPQLQRKLPAFRRCSRGVKMSSAEELGTERSWRKNDTVLSGEVKTARESLKSSFSELRALVNDPLPEALDISDAVRSKLARKGTNHEQPMENHSRDVDVPNSNTCRAIIPYQPKDAEHKKSPSVRHSRVNAERPNSTEPNNTAHKRPSLMEPNGTSQTYEWNDSIENMPNGMQLRRKKRKWSSLEEETLRTGVQMFGAGNWKTIQSFYSDVFEHRLAVDLKDKWRNMMRYINARLFGKLETEGNAANFVAID* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0607 1028 Gene3D - 957 1020 - -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 364 428 - -
Amo01g0607 1028 ProSiteProfiles Myb-like domain profile. 949 1004 IPR001005 -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 234 312 - -
Amo01g0607 1028 SUPERFAMILY Homeodomain-like 443 485 IPR009057 -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 377 398 - -
Amo01g0607 1028 CDD SANT_TRF 955 1005 - -
Amo01g0607 1028 Gene3D - 439 486 - -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 256 278 - -
Amo01g0607 1028 PANTHER MYB TRANSCRIPTION FACTOR 507 1006 - -
Amo01g0607 1028 PANTHER MYB TRANSCRIPTION FACTOR 1 484 - -
Amo01g0607 1028 SUPERFAMILY Homeodomain-like 951 1005 IPR009057 -
Amo01g0607 1028 PANTHER MYB TRANSCRIPTION FACTOR 507 1006 - -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 904 931 - -
Amo01g0607 1028 SMART sant 446 490 IPR001005 -
Amo01g0607 1028 SMART sant 953 1006 IPR001005 -
Amo01g0607 1028 PANTHER MYB TRANSCRIPTION FACTOR 1 484 - -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 888 903 - -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 279 295 - -
Amo01g0607 1028 CDD SANT_TRF 448 484 - -
Amo01g0607 1028 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 951 1008 IPR017930 -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 855 931 - -
Amo01g0607 1028 Pfam Myb-like DNA-binding domain 954 1003 IPR001005 -
Amo01g0607 1028 MobiDBLite consensus disorder prediction 855 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0607 Amo-Chr1 8830203 8860909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0607 513 697 Single Myb Histone (SMH) Gene Family AT1G15720 31.915 6.51e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g0607 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0607 - K11111 ahf:112794013 927.546