Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0589 ATGGGTTCCGACATTTGCGTCAATGGTTCTTGCTGCGTGCACGAATGGAAGAAGGGATGGCCTCTACGATCTGGTGGATTCGCCCAACTATGCATCAAGTGCGGATTTATGGAGGAATGGAAGCGTGAGATAATTGATACATTATCTGCAAATGAGTATTCACTATTCTGTAATAACTTCCACCGTCGCGAAACTGGATGGAAGGAGTGTAACTTTTGCAACAAGCCTATCCATTGTGGATGCATAGCATCTAAATCTTTGTTCGAGTACCTTGACTTTGGCGGTGTAGGATGTGTTAGCTGTGTAAATGCTTCCCAACTACGTTTGACGAGGAATACTGAAAATGGGTCTGTTTCGACTACCAAAAATAATGCAAGTGATCGGCATTCTGCGCATATTGACAACAGACAGTTTGTCAGTAGCGTGGATGAAGGAAAACTTATGGAGTTCTGCAGAATTGTTGAAGCTAGCGAATCAAGCCGTTGGAATCATGCTCAGAGAGACAACATAATCTCATGTAATGGGCAAAATGGCAAAGAAGTGACATTCAGGGAAGTGGAAAGTGGATTTTCAAATGTGATAAAGCCATCGGTTCAGTCATTAACGTTTTCTGCTTTAGAAAATAGTAGACCGACATGGGARATTAAAARTAGACATGAACCAATGACTCAACCATCTTTAAACATGTGTCTGGGAAATCCGTCTGGGAGCAACTTGGTACTGCCTTCAGCAACTGAGATTGCAGAAGGAAGACTTGAGAGCAAAGCCTCCAACTTTCAACAAAGATCTCGGCCCATATTGCCCAAACCATCRAAGACYGGACTTACWATGAATGTGGAAACAGACAAAGGCTCAACTTCTCAGGCACGCATTGCTCGACCACCTGCCGAGGGGAGGGGCAAAAACCAGTTGCTTCCTCGATACTGGCCCAGGATTACTGATCAAGAACTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCGTTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCTGGCCGAATTGGTCGACTTGTTCTCCCAAAAGCATGTGCCGAGGCTTATTTTCCTCATATTTCACAATCAGAAGGTCTTCCTTTACGGGTCCAAGACGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTCGGATGTATGTATTGGAGGGTGTGACACCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACGGTTACATTTAGTCGGATAGACCCTGGGGGTAAACTTGTTATGGGTTTCAGGAGGGCGACAAATTCTTCAGACACCCAGGATGCCTCTACATCTGCACAATCGAATGGCATTTCAACTACAGGAACCATCTCTGGTGGAACTGAGAATCTGCTATCAGGAAGTAATTATGCTGATCTTCTCCAGTCGGCGAAAGGGAATGGGGAACCTAATTCTAGTGGACATCCAGAACATCCACGTTCAGGTACTGGAGCTGCCGCTGTGCTTAAAACCGAAAATTGTGAGGAGATGATAAACAATCATTCCGTTAAGCAACCAATTCCAGTTTCAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTCATTGATAATGAAGATTCTATGGAGTTGAGACTTACCTGGGAAGAAGCACAGGACTTGCTTCGTCCGCCACCTAGTGTTAAGCCAAGTATTGTCACCATTGAGGACCAAATATTTGAAGAATATGATGAGCCCCCGGTTTTCGGAAAGAGGACTATTTTCAGTGCCTGTTCATCTGGGGGGAAGGAGCAGTGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCCGTCGATGCTCTTCTTCCTCCCAAGTGGAATTGCTCTGAGAATGTTTGGGATGCAAGCAGGGCTTCATGTTCTGCTCCAGAGGAGATGAGTTCAAGGGAATTAGAAAATCTTCTGAGAACCAACAAAGATCTTAAGAAGAGGAGAATTGCTGAGAATAATAAACCAATCCAAGAGCATGAGCCTTCTGGGTTGGATGCTCTTGCCAGTGCCGCGGTTTTAGGAGACAATCTTGTTGATCCTGTGGAGTCATCAGCTGGAGCCACCACCAGACACCCTAGACACCGTCCCGGCTGCTCCTGTATTGTGTGCATTCAACCACCAAGTGGAAAGGGGAGACACAAGCCAACATGTACTTGCAACGTGTGCATGACYGTGAAGCGCCGGTTCAAAACCCTGATGCTTAGAAAGAAGAAGCGCCAATCGGAGCGCGAAGCAGATGCTGCTCAAAAAGGTCATATTCCCCGAAAAGAYGAGTCAGATACCAATGGAAGAGCTTCAAGAGATTATCCTAAACCGAGTCACTYGGACAAAGAGGGAGGACTAAACAAAGATCAACAACCAGCCCATGTGGGAGAGTCGAATGCCGGACAAATAGACCTGAACTCGCATCCGAATCGCGACGACATGGCAGCCGATACATCGGCGCCTWGCACCTCGAATCATCTTGAAACAACAAACCGAGAGGTAAGGAACTATATGAATCAAAATGGTGTTAGAAGCTACAATAATGGTGAARTGCAGGATAATCAGCATCCTTCTTTACTCAATCAATCTAATGGAGGGTGCTTTGGATCATCCATTGTGTGGAAAATGGAAAGAAAAGATGAGGTTTACAATCATGCCAATCAAAGTCAAAGCCATAGTCAAAACAACAATCTTTCTTGA 2730 0.4505 MGSDICVNGSCCVHEWKKGWPLRSGGFAQLCIKCGFMEEWKREIIDTLSANEYSLFCNNFHRRETGWKECNFCNKPIHCGCIASKSLFEYLDFGGVGCVSCVNASQLRLTRNTENGSVSTTKNNASDRHSAHIDNRQFVSSVDEGKLMEFCRIVEASESSRWNHAQRDNIISCNGQNGKEVTFREVESGFSNVIKPSVQSLTFSALENSRPTWEIKXRHEPMTQPSLNMCLGNPSGSNLVLPSATEIAEGRLESKASNFQQRSRPILPKPSKTGLTMNVETDKGSTSQARIARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRRATNSSDTQDASTSAQSNGISTTGTISGGTENLLSGSNYADLLQSAKGNGEPNSSGHPEHPRSGTGAAAVLKTENCEEMINNHSVKQPIPVSEKKRTRNIGPKSKRLLIDNEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQIFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWNCSENVWDASRASCSAPEEMSSRELENLLRTNKDLKKRRIAENNKPIQEHEPSGLDALASAAVLGDNLVDPVESSAGATTRHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKGHIPRKDESDTNGRASRDYPKPSHXDKEGGLNKDQQPAHVGESNAGQIDLNSHPNRDDMAADTSAPXTSNHLETTNREVRNYMNQNGVRSYNNGEXQDNQHPSLLNQSNGGCFGSSIVWKMERKDEVYNHANQSQSHSQNNNLS* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0589 909 CDD B3_DNA 330 431 IPR003340 GO:0003677
Amo01g0589 909 SUPERFAMILY DNA-binding pseudobarrel domain 330 432 IPR015300 -
Amo01g0589 909 MobiDBLite consensus disorder prediction 519 533 - -
Amo01g0589 909 Gene3D - 310 437 IPR015300 -
Amo01g0589 909 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 862 - -
Amo01g0589 909 MobiDBLite consensus disorder prediction 748 873 - -
Amo01g0589 909 MobiDBLite consensus disorder prediction 427 533 - -
Amo01g0589 909 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Amo01g0589 909 MobiDBLite consensus disorder prediction 752 798 - -
Amo01g0589 909 MobiDBLite consensus disorder prediction 431 490 - -
Amo01g0589 909 Pfam CW-type Zinc Finger 601 643 IPR011124 GO:0008270
Amo01g0589 909 Gene3D - 599 654 - -
Amo01g0589 909 MobiDBLite consensus disorder prediction 827 873 - -
Amo01g0589 909 Pfam B3 DNA binding domain 332 432 IPR003340 GO:0003677
Amo01g0589 909 ProSiteProfiles Zinc finger CW-type profile. 596 646 IPR011124 GO:0008270
Amo01g0589 909 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 862 - -
Amo01g0589 909 Coils Coil 642 669 - -
Amo01g0589 909 SMART B3_2 332 433 IPR003340 GO:0003677
Amo01g0589 909 MobiDBLite consensus disorder prediction 802 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0589 Amo-Chr1 8608958 8616270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0589 1 826 B3 DNA Binding Superfamily AT2G30470 49.701 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo01g0589 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0589 - - gmx:100789848 1343.18