Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0583 GCGCTTCTGCCGCCGTCCGTCCATCTTCGCAGCTCTCCCTTGAAAGGATGTGAAAACCCTAGCCTCCATCGCGCCGCCATCAATCTCACCGTTCGTCGTGGTCGTTCACAATCCTCATGTCTCACTGCATCCCGCGAGTCCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCGATCCTCCACCACCTGTCGGAGCACCCGTTCGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTTGGCAAACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCAGGGAGGATCAAGTCCTTGCTCGAGAATCCTAATATTCCTTTAGTTTTTGCTAGAACTAAGTTCCGTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCAGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCCGCAAAATCTGTTCTTGTCTGCAACAACCACAAGTAATCTGCAAAGTTGTCTGAGCGTTACCAGGATAGACTGTCAAGGAGGTAAATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGATGGAGAGGGAGGAGCTGAATTTGAGCAAAGAGAGTAATAACAACGGTGTTGGAGGTAACAACAGTAAGAGTGGCGTTGATGGCTTCATTGATAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAATAGTTCCGAAGAGTTGAAGAATCATTCTTTACTACATGAAAAAGTGATAAGGGTCATGTGGTCTCGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCTTTGGAAATTGCTTTGGTACTTCAAATTGGTTTAGAGGGAGTGATGATAGTGATACTGCTGAGAAGCCACGGGAAGGAGAAACAATGCTGTACGAATTCTGGATCAGCAACTTCAAAACTACATATCTCAATACGCTGAAACTCTTTGGAGGTGAAACCAAAGAGGAATAA 1155 0.4632 ALLPPSVHLRSSPLKGCENPSLHRAAINLTVRRGRSQSSCLTASRESWRAATCSASMKLAAARPPLSPSRSSTTCRSTRSFRALGSCLHLRIAVVVGGMDMLWQTKELAARPHVVIATPGRIKSLLENPNIPLVFARTKFRVLDEADRVLDVSFQEELKFIFKCLPENPQNLFLSATTTSNLQSCLSVTRIDCQGGKFDAYFIKNGRYGHPICHCIYLYMQMEREELNLSKESNNNGVGGNNSKSGVDGFIDRSKVRILLCDNDSNSSEELKNHSLLHEKVIRVMWSRRDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKFGNILSSFGNCFGTSNWFRGSDDSDTAEKPREGETMLYEFWISNFKTTYLNTLKLFGGETKEE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0583 384 Gene3D - 66 193 IPR027417 -
Amo01g0583 384 SUPERFAMILY RNA-binding domain, RBD 274 327 IPR035979 GO:0003676
Amo01g0583 384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 196 IPR014001 -
Amo01g0583 384 PANTHER RNA HELICASE 67 188 - -
Amo01g0583 384 Gene3D - 288 334 IPR012677 -
Amo01g0583 384 Pfam DEAD/DEAH box helicase 79 183 IPR011545 GO:0003676|GO:0005524
Amo01g0583 384 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 67 188 - -
Amo01g0583 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 184 IPR027417 -
Amo01g0583 384 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 142 150 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0583 Amo-Chr1 8530316 8533840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0583 259 327 Eukaryotic Initiation Factors Gene Family AT2G36660 60.870 2.09e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0583 K14778 - aip:110271131 170.629