Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0579 ATGTGTCTCCATCGCCGGCACCCACCTCTCTTCCATTACGCCCGCATTTTTTCCGTCGCGAGTTTCCCTCTCATCCCCCGGCAATCCTGGTCGAGGTCGGCCATCGTCGTTCCGGTCGCGCGTTCTGGTGAGTGGCTCGCCTCTCTCTCTCACGCCGATACCCAGCTTGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGCAAGCTCAGAAGGTGTAACCACATATTCCATCTTAGTTGCATTCAGCAATGGATAGAGCAAAATTAA 297 0.5219 MCLHRRHPPLFHYARIFSVASFPLIPRQSWSRSAIVVPVARSGEWLASLSHADTQLEDDDETCSICLVEFEDEDAVSKLRRCNHIFHLSCIQQWIEQN* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0579 98 SUPERFAMILY RING/U-box 56 98 - -
Amo01g0579 98 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 98 IPR013083 -
Amo01g0579 98 PANTHER RING ZINC FINGER PROTEIN-RELATED 52 97 - -
Amo01g0579 98 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 52 97 - -
Amo01g0579 98 ProSiteProfiles Zinc finger RING-type profile. 63 98 IPR001841 -
Amo01g0579 98 Pfam Ring finger domain 62 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0579 Amo-Chr1 8479083 8479903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0579 24 95 C3H Transcription Factor Family AT4G38140 34.066 2.36e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0579 - - jre:108997319 72.7886